Analysis of interatomic Contacts of Structural Units in PDB entry:
3H5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H5J entry

There are 2 chains in PDB entry 3H5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASP 168
B
 GLU 2ASP 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3H5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
26 30Right-handed 310
Helix 3
3
A
38 42Right-handed 310
Helix 4
4
A
45 49Right-handed 310
Helix 5
5
A
52 56Right-handed 310
Helix 6
6
A
58 62Right-handed 310
Helix 7
7
A
77 88Right-handed alpha
Helix 8
8
A
98 108Right-handed alpha
Helix 9
9
A
116 130Right-handed alpha
Helix 10
10
A
156 166Right-handed alpha
Helix 11
11
B
20 25Right-handed alpha
Helix 12
12
B
26 30Right-handed 310
Helix 13
13
B
38 42Right-handed 310
Helix 14
14
B
45 49Right-handed 310
Helix 15
15
B
52 56Right-handed 310
Helix 16
16
B
58 62Right-handed 310
Helix 17
17
B
77 88Right-handed alpha
Helix 18
18
B
98 108Right-handed alpha
Helix 19
19
B
116 130Right-handed alpha
Helix 20
20
B
156 166Right-handed alpha
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There are 2 sheets in PDB entry 3H5J. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
91 94parallel
Strand 3
A
64 67parallel
Strand 4
A
6 14parallel
Strand 5
A
134 138anti-parallel
Strand 6
A
143 146anti-parallel
Strand 7
A
149 152anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
91 94parallel
Strand 3
B
64 67parallel
Strand 4
B
6 14parallel
Strand 5
B
134 138anti-parallel
Strand 6
B
143 146anti-parallel
Strand 7
B
149 152anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il