Analysis of interatomic Contacts of Structural Units in PDB entry:
3H5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H5L entry

There are 2 chains in PDB entry 3H5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 41MET 437
B
 GLN 36MET 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3H5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 75Right-handed alpha
Helix 2
2
A
95 109Right-handed alpha
Helix 3
3
A
126 135Right-handed alpha
Helix 4
4
A
144 154Right-handed alpha
Helix 5
5
A
168 185Right-handed alpha
Helix 6
6
A
202 216Right-handed alpha
Helix 7
7
A
217 220Right-handed 310
Helix 8
8
A
236 246Right-handed alpha
Helix 9
9
A
257 269Right-handed alpha
Helix 10
10
A
281 284Right-handed 310
Helix 11
11
A
285 293Right-handed alpha
Helix 12
12
A
294 297Right-handed 310
Helix 13
13
A
310 325Right-handed alpha
Helix 14
14
A
329 350Right-handed alpha
Helix 15
15
A
358 372Right-handed alpha
Helix 16
16
B
55 76Right-handed alpha
Helix 17
17
B
95 109Right-handed alpha
Helix 18
18
B
126 135Right-handed alpha
Helix 19
19
B
144 154Right-handed alpha
Helix 20
20
B
168 185Right-handed alpha
Helix 21
21
B
202 216Right-handed alpha
Helix 22
22
B
217 220Right-handed 310
Helix 23
23
B
236 246Right-handed alpha
Helix 24
24
B
257 269Right-handed alpha
Helix 25
25
B
281 284Right-handed 310
Helix 26
26
B
285 293Right-handed alpha
Helix 27
27
B
294 297Right-handed 310
Helix 28
28
B
310 325Right-handed alpha
Helix 29
29
B
329 350Right-handed alpha
Helix 30
30
B
358 372Right-handed alpha
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There are 10 sheets in PDB entry 3H5L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 90first strand
Strand 2
A
43 49parallel
Strand 3
A
114 116parallel
Strand 4
A
137 140parallel
Strand 5
A
161 163parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 228first strand
Strand 2
A
194 199parallel
Strand 3
A
250 253parallel
Strand 4
A
276 279parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
407 410anti-parallel
Strand 3
A
419 422anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
379 382anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
404 405parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 90first strand
Strand 2
B
43 49parallel
Strand 3
B
114 116parallel
Strand 4
B
137 140parallel
Strand 5
B
161 163parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 228first strand
Strand 2
B
194 199parallel
Strand 3
B
250 253parallel
Strand 4
B
276 279parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 303first strand
Strand 2
B
407 410anti-parallel
Strand 3
B
419 422anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
379 382anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
404 405parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il