Analysis of interatomic Contacts of Structural Units in PDB entry:
3H5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H5O entry

There are 2 chains in PDB entry 3H5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 71GLY 341
B
 ARG 71GLY 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3H5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
85 99Right-handed alpha
Helix 2
2
A
111 124Right-handed alpha
Helix 3
3
A
140 148Right-handed alpha
Helix 4
4
A
169 184Right-handed alpha
Helix 5
5
A
197 214Right-handed alpha
Helix 6
6
A
218 220Right-handed 310
Helix 7
7
A
230 245Right-handed alpha
Helix 8
8
A
255 269Right-handed alpha
Helix 9
9
A
285 289Right-handed 310
Helix 10
10
A
301 318Right-handed alpha
Helix 11
11
A
336 341Right-handed alpha
Helix 12
12
B
85 99Right-handed alpha
Helix 13
13
B
111 124Right-handed alpha
Helix 14
14
B
140 148Right-handed alpha
Helix 15
15
B
169 184Right-handed alpha
Helix 16
16
B
197 215Right-handed alpha
Helix 17
17
B
218 220Right-handed 310
Helix 18
18
B
230 245Right-handed alpha
Helix 19
19
B
255 269Right-handed alpha
Helix 20
20
B
285 289Right-handed 310
Helix 21
21
B
301 318Right-handed alpha
Helix 22
22
B
336 341Right-handed alpha
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There are 6 sheets in PDB entry 3H5O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
72 77parallel
Strand 3
A
129 133parallel
Strand 4
A
152 156parallel
Strand 5
A
165 167parallel
Strand 6
A
326 328parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
189 194parallel
Strand 3
A
250 253parallel
Strand 4
A
278 280parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
332 334anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 107first strand
Strand 2
B
72 77parallel
Strand 3
B
129 133parallel
Strand 4
B
152 156parallel
Strand 5
B
165 167parallel
Strand 6
B
326 328parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 225first strand
Strand 2
B
189 194parallel
Strand 3
B
250 253parallel
Strand 4
B
278 280parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
332 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il