Analysis of interatomic Contacts of Structural Units in PDB entry:
3H5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H5Q entry

There is 1 chain in PDB entry 3H5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2GLU 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3H5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-2 12Right-handed alpha
Helix 2
2
A
17 30Right-handed alpha
Helix 3
3
A
34 49Right-handed alpha
Helix 4
4
A
51 64Right-handed alpha
Helix 5
5
A
90 102Right-handed alpha
Helix 6
6
A
119 125Right-handed alpha
Helix 7
7
A
135 147Right-handed alpha
Helix 8
8
A
158 170Right-handed alpha
Helix 9
9
A
176 191Right-handed alpha
Helix 10
10
A
210 229Right-handed alpha
Helix 11
11
A
249 261Right-handed alpha
Helix 12
12
A
265 283Right-handed alpha
Helix 13
13
A
288 302Right-handed alpha
Helix 14
14
A
303 316Right-handed alpha
Helix 15
15
A
320 325Right-handed alpha
Helix 16
16
A
326 329Right-handed 310
Helix 17
17
A
350 361Right-handed alpha
Helix 18
18
A
404 414Right-handed alpha
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There are 4 sheets in PDB entry 3H5Q. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
195 202parallel
Strand 3
A
232 238parallel
Strand 4
A
427 431anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
148 151parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
377 380anti-parallel
Strand 3
A
393 399anti-parallel
Strand 4
A
334 339anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
344 349anti-parallel
Strand 3
A
415 418anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il