Analysis of interatomic Contacts of Structural Units in PDB entry:
3H5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3H5R entry

There are 8 chains in PDB entry 3H5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 348
B	MET 1	GLY 347
C	MET 1	ARG 349
D	MET 1	GLY 347
E	MET 71	ALA 76
F	MET 71	ALA 76
G	MET 71	MET 71
H	MET 71	MET 71

There are 57 helices in PDB entry 3H5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	31	44	Right-handed alpha
Helix 2	2	A	50	58	Right-handed alpha
Helix 3	3	A	61	75	Right-handed alpha
Helix 4	4	A	82	85	Right-handed 310
Helix 5	5	A	93	102	Right-handed alpha
Helix 6	6	A	105	115	Right-handed alpha
Helix 7	7	A	124	138	Right-handed alpha
Helix 8	8	A	152	157	Right-handed 310
Helix 9	9	A	162	166	Right-handed 310
Helix 10	10	A	169	182	Right-handed alpha
Helix 11	11	A	197	203	Right-handed 310
Helix 12	12	A	218	231	Right-handed alpha
Helix 13	14	A	291	312	Right-handed alpha
Helix 14	15	B	31	43	Right-handed alpha
Helix 15	16	B	44	46	Right-handed 310
Helix 16	17	B	50	58	Right-handed alpha
Helix 17	18	B	61	75	Right-handed alpha
Helix 18	19	B	82	85	Right-handed 310
Helix 19	20	B	92	101	Right-handed alpha
Helix 20	21	B	105	115	Right-handed alpha
Helix 21	22	B	124	137	Right-handed alpha
Helix 22	23	B	151	157	Right-handed 310
Helix 23	24	B	162	166	Right-handed 310
Helix 24	25	B	169	182	Right-handed alpha
Helix 25	26	B	196	203	Right-handed 310
Helix 26	27	B	218	231	Right-handed alpha
Helix 27	28	B	272	285	Right-handed alpha
Helix 28	29	B	291	312	Right-handed alpha
Helix 29	30	C	22	26	Right-handed 310
Helix 30	31	C	31	45	Right-handed alpha
Helix 31	32	C	51	56	Right-handed alpha
Helix 32	33	C	61	75	Right-handed alpha
Helix 33	34	C	82	85	Right-handed 310
Helix 34	35	C	92	102	Right-handed alpha
Helix 35	36	C	105	115	Right-handed alpha
Helix 36	37	C	124	138	Right-handed alpha
Helix 37	38	C	151	157	Right-handed 310
Helix 38	39	C	162	166	Right-handed 310
Helix 39	40	C	169	182	Right-handed alpha
Helix 40	41	C	197	203	Right-handed 310
Helix 41	42	C	218	230	Right-handed alpha
Helix 42	43	C	272	285	Right-handed alpha
Helix 43	44	C	291	312	Right-handed alpha
Helix 44	45	D	22	26	Right-handed 310
Helix 45	46	D	31	44	Right-handed alpha
Helix 46	47	D	50	58	Right-handed alpha
Helix 47	48	D	61	75	Right-handed alpha
Helix 48	49	D	82	84	Right-handed 310
Helix 49	50	D	92	102	Right-handed alpha
Helix 50	51	D	105	115	Right-handed alpha
Helix 51	52	D	124	138	Right-handed alpha
Helix 52	53	D	151	157	Right-handed 310
Helix 53	54	D	169	182	Right-handed alpha
Helix 54	55	D	196	203	Right-handed 310
Helix 55	56	D	218	230	Right-handed alpha
Helix 56	57	D	273	285	Right-handed alpha
Helix 57	58	D	291	312	Right-handed alpha

There are 12 sheets in PDB entry 3H5R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	17	20	anti-parallel
Strand 3	A	27	29	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	190	first strand
Strand 2	A	141	145	parallel
Strand 3	A	117	121	parallel
Strand 4	A	208	211	parallel
Strand 5	A	234	240	parallel
Strand 6	A	243	250	anti-parallel
Strand 7	A	321	326	anti-parallel
Strand 8	A	332	336	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	17	20	anti-parallel
Strand 3	B	27	29	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	190	first strand
Strand 2	B	141	145	parallel
Strand 3	B	117	121	parallel
Strand 4	B	208	211	parallel
Strand 5	B	234	240	parallel
Strand 6	B	243	250	anti-parallel
Strand 7	B	321	325	anti-parallel
Strand 8	B	332	336	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	2	5	anti-parallel
Strand 3	C	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	17	20	anti-parallel
Strand 3	C	27	29	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	190	first strand
Strand 2	C	141	145	parallel
Strand 3	C	117	121	parallel
Strand 4	C	208	211	parallel
Strand 5	C	234	240	parallel
Strand 6	C	243	250	anti-parallel
Strand 7	C	321	326	anti-parallel
Strand 8	C	332	336	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	17	20	anti-parallel
Strand 3	D	27	29	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	190	first strand
Strand 2	D	141	145	parallel
Strand 3	D	117	121	parallel
Strand 4	D	208	211	parallel
Strand 5	D	234	240	parallel
Strand 6	D	243	250	anti-parallel
Strand 7	D	321	326	anti-parallel
Strand 8	D	332	336	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3H5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
3H5R