Analysis of interatomic Contacts of Structural Units in PDB entry:
3H5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H5T entry

There is 1 chain in PDB entry 3H5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7ALA 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3H5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
22 32Right-handed alpha
Helix 3
3
A
33 36Right-handed 310
Helix 4
4
A
37 51Right-handed alpha
Helix 5
5
A
80 85Right-handed alpha
Helix 6
6
A
85 99Right-handed alpha
Helix 7
7
A
116 126Right-handed alpha
Helix 8
8
A
141 151Right-handed alpha
Helix 9
9
A
172 177Right-handed alpha
Helix 10
10
A
177 187Right-handed alpha
Helix 11
11
A
209 215Right-handed alpha
Helix 12
12
A
220 236Right-handed alpha
Helix 13
13
A
238 242Right-handed 310
Helix 14
14
A
251 266Right-handed alpha
Helix 15
15
A
276 290Right-handed alpha
Helix 16
16
A
306 312Right-handed alpha
Helix 17
17
A
320 337Right-handed alpha
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There are 2 sheets in PDB entry 3H5T. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 108first strand
Strand 2
A
70 75parallel
Strand 3
A
132 135parallel
Strand 4
A
154 157parallel
Strand 5
A
168 171parallel
Strand 6
A
344 347parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
244 247anti-parallel
Strand 3
A
192 197parallel
Strand 4
A
271 274parallel
Strand 5
A
299 304parallel
Strand 6
A
316 318parallel
Strand 7
A
350 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il