Analysis of interatomic Contacts of Structural Units in PDB entry:
3H5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H5V entry

There are 3 chains in PDB entry 3H5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LEU 378
B
 SER 3LEU 378
C
 ILE 6LEU 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3H5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
48 63Right-handed alpha
Helix 3
3
A
75 87Right-handed alpha
Helix 4
4
A
111 122Right-handed alpha
Helix 5
5
A
137 151Right-handed alpha
Helix 6
6
A
168 180Right-handed alpha
Helix 7
7
A
191 205Right-handed alpha
Helix 8
8
A
220 224Right-handed 310
Helix 9
9
A
226 230Right-handed 310
Helix 10
10
A
246 257Right-handed alpha
Helix 11
11
A
273 296Right-handed alpha
Helix 12
12
A
319 329Right-handed alpha
Helix 13
13
B
16 31Right-handed alpha
Helix 14
14
B
48 63Right-handed alpha
Helix 15
15
B
75 87Right-handed alpha
Helix 16
16
B
111 122Right-handed alpha
Helix 17
17
B
137 147Right-handed alpha
Helix 18
18
B
167 176Right-handed alpha
Helix 19
19
B
191 206Right-handed alpha
Helix 20
20
B
220 224Right-handed 310
Helix 21
21
B
226 230Right-handed 310
Helix 22
22
B
246 257Right-handed alpha
Helix 23
23
B
273 296Right-handed alpha
Helix 24
24
B
319 330Right-handed alpha
Helix 25
25
C
16 30Right-handed alpha
Helix 26
26
C
48 62Right-handed alpha
Helix 27
27
C
75 87Right-handed alpha
Helix 28
28
C
111 122Right-handed alpha
Helix 29
29
C
137 148Right-handed alpha
Helix 30
30
C
166 175Right-handed alpha
Helix 31
31
C
191 206Right-handed alpha
Helix 32
32
C
220 224Right-handed 310
Helix 33
33
C
226 230Right-handed 310
Helix 34
34
C
247 258Right-handed alpha
Helix 35
35
C
273 295Right-handed alpha
Helix 36
36
C
319 328Right-handed alpha
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There are 9 sheets in PDB entry 3H5V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 44first strand
Strand 2
A
5 13parallel
Strand 3
A
67 69parallel
Strand 4
A
90 92parallel
Strand 5
A
104 106parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
126 131parallel
Strand 3
A
185 189parallel
Strand 4
A
213 216parallel
Strand 5
A
235 240parallel
Strand 6
A
351 358anti-parallel
Strand 7
A
361 369anti-parallel
Strand 8
A
373 376anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
337 339anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 44first strand
Strand 2
B
5 13parallel
Strand 3
B
67 69parallel
Strand 4
B
90 92parallel
Strand 5
B
104 106parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 158first strand
Strand 2
B
126 131parallel
Strand 3
B
185 187parallel
Strand 4
B
213 216parallel
Strand 5
B
235 240parallel
Strand 6
B
351 358anti-parallel
Strand 7
B
361 369anti-parallel
Strand 8
B
373 376anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 334first strand
Strand 2
B
337 339anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 44first strand
Strand 2
C
7 13parallel
Strand 3
C
67 69parallel
Strand 4
C
90 92parallel
Strand 5
C
104 106parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 158first strand
Strand 2
C
126 131parallel
Strand 3
C
185 189parallel
Strand 4
C
213 216parallel
Strand 5
C
235 240parallel
Strand 6
C
352 358anti-parallel
Strand 7
C
361 368anti-parallel
Strand 8
C
375 376anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
332 334first strand
Strand 2
C
337 341anti-parallel
Strand 3
C
347 348anti-parallel
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