Analysis of interatomic Contacts of Structural Units in PDB entry:
3H6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H6E entry

There are 2 chains in PDB entry 3H6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6GLU 467
B
 LEU 1VAL 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3H6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 62Right-handed alpha
Helix 2
2
A
99 108Right-handed alpha
Helix 3
3
A
112 117Right-handed alpha
Helix 4
4
A
126 138Right-handed alpha
Helix 5
5
A
138 144Right-handed alpha
Helix 6
6
A
150 158Right-handed alpha
Helix 7
7
A
166 170Right-handed alpha
Helix 8
8
A
184 190Right-handed alpha
Helix 9
9
A
192 196Right-handed 310
Helix 10
10
A
210 218Right-handed alpha
Helix 11
11
A
231 240Right-handed alpha
Helix 12
12
A
270 274Right-handed 310
Helix 13
13
A
275 278Right-handed 310
Helix 14
14
A
297 307Right-handed alpha
Helix 15
15
A
308 312Right-handed 310
Helix 16
16
A
315 317Right-handed 310
Helix 17
17
A
318 325Right-handed alpha
Helix 18
18
A
325 332Right-handed alpha
Helix 19
19
A
360 383Right-handed alpha
Helix 20
20
A
393 397Right-handed 310
Helix 21
21
A
398 409Right-handed alpha
Helix 22
22
A
424 426Right-handed 310
Helix 23
23
A
427 432Right-handed alpha
Helix 24
24
A
454 467Right-handed alpha
Helix 25
25
B
47 60Right-handed alpha
Helix 26
26
B
61 63Right-handed 310
Helix 27
27
B
99 108Right-handed alpha
Helix 28
28
B
112 117Right-handed alpha
Helix 29
29
B
126 138Right-handed alpha
Helix 30
30
B
138 144Right-handed alpha
Helix 31
31
B
150 160Right-handed alpha
Helix 32
32
B
165 170Right-handed alpha
Helix 33
33
B
184 190Right-handed alpha
Helix 34
34
B
192 196Right-handed 310
Helix 35
35
B
210 218Right-handed alpha
Helix 36
36
B
231 240Right-handed alpha
Helix 37
37
B
275 278Right-handed 310
Helix 38
38
B
297 307Right-handed alpha
Helix 39
39
B
308 312Right-handed 310
Helix 40
40
B
315 317Right-handed 310
Helix 41
41
B
318 332Right-handed alpha
Helix 42
42
B
360 383Right-handed alpha
Helix 43
43
B
393 397Right-handed 310
Helix 44
44
B
398 409Right-handed alpha
Helix 45
45
B
424 426Right-handed 310
Helix 46
46
B
427 432Right-handed alpha
Helix 47
47
B
454 470Right-handed alpha
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There are 15 sheets in PDB entry 3H6E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 34first strand
Strand 2
A
15 21anti-parallel
Strand 3
A
7 11anti-parallel
Strand 4
A
69 74parallel
Strand 5
A
224 226parallel
Strand 6
A
205 208anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 34first strand
Strand 2
A
15 21anti-parallel
Strand 3
A
7 11anti-parallel
Strand 4
A
69 74parallel
Strand 5
A
229 230parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
44 45anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
146 149anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
199 200parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
182 183anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 284first strand
Strand 2
A
290 296anti-parallel
Strand 3
A
259 264anti-parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
388 392parallel
Strand 6
A
413 417parallel
Strand 7
A
441 443anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
353 355anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 34first strand
Strand 2
B
15 22anti-parallel
Strand 3
B
4 11anti-parallel
Strand 4
B
69 74parallel
Strand 5
B
224 226parallel
Strand 6
B
205 208anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 34first strand
Strand 2
B
15 22anti-parallel
Strand 3
B
4 11anti-parallel
Strand 4
B
69 74parallel
Strand 5
B
229 230parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
43 45anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
79 83anti-parallel
Strand 3
B
146 149anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
182 183anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 284first strand
Strand 2
B
290 296anti-parallel
Strand 3
B
259 264anti-parallel
Strand 4
B
250 254anti-parallel
Strand 5
B
388 391parallel
Strand 6
B
413 416parallel
Strand 7
B
442 443anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
353 355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il