Analysis of interatomic Contacts of Structural Units in PDB entry:
3H86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H86 entry

There are 4 chains in PDB entry 3H86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 2ARG 192
A
 LYS 2ARG 192
C
 LYS 2ARG 192
G
 LYS 2ARG 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3H86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
15 29Right-handed alpha
Helix 2
2
B
39 43Right-handed alpha
Helix 3
3
B
43 49Right-handed alpha
Helix 4
4
B
66 84Right-handed alpha
Helix 5
5
B
106 112Right-handed alpha
Helix 6
6
B
124 135Right-handed alpha
Helix 7
7
B
144 167Right-handed alpha
Helix 8
8
B
179 192Right-handed alpha
Helix 9
9
A
15 29Right-handed alpha
Helix 10
10
A
39 48Right-handed alpha
Helix 11
11
A
56 60Right-handed 310
Helix 12
12
A
63 80Right-handed alpha
Helix 13
13
A
106 114Right-handed alpha
Helix 14
14
A
124 132Right-handed alpha
Helix 15
15
A
144 167Right-handed alpha
Helix 16
16
A
179 192Right-handed alpha
Helix 17
17
C
15 29Right-handed alpha
Helix 18
18
C
38 43Right-handed alpha
Helix 19
19
C
47 51Right-handed 310
Helix 20
20
C
63 68Right-handed alpha
Helix 21
21
C
73 82Right-handed alpha
Helix 22
22
C
106 114Right-handed alpha
Helix 23
23
C
124 135Right-handed alpha
Helix 24
24
C
144 167Right-handed alpha
Helix 25
25
C
179 184Right-handed alpha
Helix 26
26
C
185 192Right-handed alpha
Helix 27
27
G
15 31Right-handed alpha
Helix 28
28
G
39 50Right-handed alpha
Helix 29
29
G
55 61Right-handed 310
Helix 30
30
G
63 85Right-handed alpha
Helix 31
31
G
106 114Right-handed alpha
Helix 32
32
G
124 130Right-handed alpha
Helix 33
33
G
130 135Right-handed alpha
Helix 34
34
G
144 167Right-handed alpha
Helix 35
35
G
179 189Right-handed alpha
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There are 8 sheets in PDB entry 3H86. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
87 90parallel
Strand 3
B
5 9parallel
Strand 4
B
117 122parallel
Strand 5
B
169 174parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
100 103anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
87 91parallel
Strand 3
A
5 9parallel
Strand 4
A
117 122parallel
Strand 5
A
169 174parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
100 103anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 90first strand
Strand 2
C
5 9parallel
Strand 3
C
117 122parallel
Strand 4
C
169 174parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 97first strand
Strand 2
C
100 103anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
35 38first strand
Strand 2
G
87 90parallel
Strand 3
G
5 9parallel
Strand 4
G
117 122parallel
Strand 5
G
169 174parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
94 97first strand
Strand 2
G
100 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il