Analysis of interatomic Contacts of Structural Units in PDB entry:
3H8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3H8D entry

There are 8 chains in PDB entry 3H8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1145	LEU 1264
B	ARG 1146	SER 1248
C	ASP 1143	LEU 1264
D	LYS 1145	LEU 1263
E	SER 674	GLU 711
F	GLY 675	GLU 711
G	SER 674	GLU 711
H	GLY 675	GLU 711

There are 35 helices in PDB entry 3H8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1158	1161	Right-handed 310
Helix 2	2	A	1164	1168	Right-handed 310
Helix 3	3	A	1210	1215	Right-handed alpha
Helix 4	4	A	1216	1219	Right-handed 310
Helix 5	5	A	1225	1236	Right-handed alpha
Helix 6	6	A	1237	1248	Right-handed alpha
Helix 7	7	A	1254	1264	Right-handed alpha
Helix 8	8	B	1157	1161	Right-handed 310
Helix 9	9	B	1164	1168	Right-handed 310
Helix 10	10	B	1210	1215	Right-handed alpha
Helix 11	11	B	1216	1219	Right-handed 310
Helix 12	12	B	1225	1236	Right-handed alpha
Helix 13	13	B	1237	1248	Right-handed alpha
Helix 14	14	C	1144	1146	Right-handed 310
Helix 15	15	C	1157	1161	Right-handed 310
Helix 16	16	C	1164	1168	Right-handed 310
Helix 17	17	C	1210	1215	Right-handed alpha
Helix 18	18	C	1216	1219	Right-handed 310
Helix 19	19	C	1225	1236	Right-handed alpha
Helix 20	20	C	1237	1248	Right-handed alpha
Helix 21	21	C	1254	1264	Right-handed alpha
Helix 22	22	D	1158	1161	Right-handed 310
Helix 23	23	D	1164	1168	Right-handed 310
Helix 24	24	D	1210	1215	Right-handed alpha
Helix 25	25	D	1225	1236	Right-handed alpha
Helix 26	26	D	1237	1248	Right-handed alpha
Helix 27	27	D	1254	1263	Right-handed alpha
Helix 28	28	E	677	688	Right-handed alpha
Helix 29	29	E	696	710	Right-handed alpha
Helix 30	30	F	677	688	Right-handed alpha
Helix 31	31	F	696	710	Right-handed alpha
Helix 32	32	G	677	688	Right-handed alpha
Helix 33	33	G	696	710	Right-handed alpha
Helix 34	34	H	677	688	Right-handed alpha
Helix 35	35	H	696	710	Right-handed alpha

There are 8 sheets in PDB entry 3H8D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1195	1198	first strand
Strand 2	A	1181	1188	anti-parallel
Strand 3	A	1170	1178	anti-parallel
Strand 4	A	1148	1156	anti-parallel
Strand 5	A	1223	1224	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1195	1198	first strand
Strand 2	A	1181	1188	anti-parallel
Strand 3	A	1170	1178	anti-parallel
Strand 4	A	1148	1156	anti-parallel
Strand 5	E	690	691	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1195	1198	first strand
Strand 2	B	1181	1188	anti-parallel
Strand 3	B	1171	1178	anti-parallel
Strand 4	B	1148	1156	anti-parallel
Strand 5	B	1223	1224	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1195	1198	first strand
Strand 2	B	1181	1188	anti-parallel
Strand 3	B	1171	1178	anti-parallel
Strand 4	B	1148	1156	anti-parallel
Strand 5	F	690	691	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1195	1198	first strand
Strand 2	C	1181	1188	anti-parallel
Strand 3	C	1171	1178	anti-parallel
Strand 4	C	1148	1156	anti-parallel
Strand 5	C	1223	1224	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1195	1198	first strand
Strand 2	C	1181	1188	anti-parallel
Strand 3	C	1171	1178	anti-parallel
Strand 4	C	1148	1156	anti-parallel
Strand 5	G	690	691	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1195	1198	first strand
Strand 2	D	1181	1188	anti-parallel
Strand 3	D	1170	1178	anti-parallel
Strand 4	D	1148	1156	anti-parallel
Strand 5	D	1223	1224	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1195	1198	first strand
Strand 2	D	1181	1188	anti-parallel
Strand 3	D	1170	1178	anti-parallel
Strand 4	D	1148	1156	anti-parallel
Strand 5	H	690	691	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3H8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
3H8D