Analysis of interatomic Contacts of Structural Units in PDB entry:
3H9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H9E entry

There are 2 chains in PDB entry 3H9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 ARG 74GLU 409
P
 ARG 74ASN 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3H9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
O
84 97Right-handed alpha
Helix 2
2
O
110 120Right-handed alpha
Helix 3
3
O
152 156Right-handed 310
Helix 4
4
O
157 162Right-handed 310
Helix 5
5
O
175 185Right-handed alpha
Helix 6
6
O
207 211Right-handed 310
Helix 7
7
O
223 241Right-handed alpha
Helix 8
8
O
267 272Right-handed 310
Helix 9
9
O
284 293Right-handed alpha
Helix 10
10
O
294 297Right-handed 310
Helix 11
11
O
326 340Right-handed alpha
Helix 12
12
O
354 359Right-handed 310
Helix 13
13
O
389 408Right-handed alpha
Helix 14
14
P
84 98Right-handed alpha
Helix 15
15
P
110 120Right-handed alpha
Helix 16
16
P
152 156Right-handed 310
Helix 17
17
P
157 162Right-handed 310
Helix 18
18
P
175 185Right-handed alpha
Helix 19
19
P
207 211Right-handed 310
Helix 20
20
P
223 241Right-handed alpha
Helix 21
21
P
267 272Right-handed 310
Helix 22
22
P
284 293Right-handed alpha
Helix 23
23
P
294 297Right-handed 310
Helix 24
24
P
326 340Right-handed alpha
Helix 25
25
P
354 359Right-handed 310
Helix 26
26
P
389 408Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3H9E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
131 134first strand
Strand 2
O
137 140anti-parallel
Strand 3
O
143 148anti-parallel
Strand 4
O
100 105parallel
Strand 5
O
77 81parallel
Strand 6
O
165 168parallel
Strand 7
O
189 192parallel
Strand 8
O
218 220parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
279 281first strand
Strand 2
O
300 307anti-parallel
Strand 3
O
242 252parallel
Strand 4
O
313 321anti-parallel
Strand 5
O
379 386anti-parallel
Strand 6
O
365 368anti-parallel
Strand 7
O
346 349parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
279 281first strand
Strand 2
O
300 307anti-parallel
Strand 3
O
242 252parallel
Strand 4
O
313 321anti-parallel
Strand 5
O
379 386anti-parallel
Strand 6
O
373 376anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
131 134first strand
Strand 2
P
137 140anti-parallel
Strand 3
P
143 148anti-parallel
Strand 4
P
100 105parallel
Strand 5
P
77 81parallel
Strand 6
P
165 168parallel
Strand 7
P
189 192parallel
Strand 8
P
218 220parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
279 282first strand
Strand 2
P
300 307anti-parallel
Strand 3
P
242 252parallel
Strand 4
P
313 321anti-parallel
Strand 5
P
379 386anti-parallel
Strand 6
P
365 368anti-parallel
Strand 7
P
346 349parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
279 282first strand
Strand 2
P
300 307anti-parallel
Strand 3
P
242 252parallel
Strand 4
P
313 321anti-parallel
Strand 5
P
379 386anti-parallel
Strand 6
P
373 376anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il