Analysis of interatomic Contacts of Structural Units in PDB entry:
3H9G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3H9G entry

There are 8 chains in PDB entry 3H9G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 348
B	MET 1	GLY 347
C	MET 1	ASN 348
D	MET 1	GLY 347
E	MET 1	ALA 6
F	MET 1	ALA 6
G	MET 1	ALA 6
H	MET 1	ALA 6

There are 59 helices in PDB entry 3H9G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	31	44	Right-handed alpha
Helix 2	2	A	50	56	Right-handed alpha
Helix 3	3	A	61	75	Right-handed alpha
Helix 4	4	A	82	85	Right-handed 310
Helix 5	5	A	92	102	Right-handed alpha
Helix 6	6	A	105	115	Right-handed alpha
Helix 7	7	A	124	137	Right-handed alpha
Helix 8	8	A	152	157	Right-handed 310
Helix 9	9	A	162	166	Right-handed 310
Helix 10	10	A	169	182	Right-handed alpha
Helix 11	11	A	196	203	Right-handed 310
Helix 12	12	A	218	231	Right-handed alpha
Helix 13	13	A	272	285	Right-handed alpha
Helix 14	14	A	291	312	Right-handed alpha
Helix 15	15	B	22	26	Right-handed 310
Helix 16	16	B	31	44	Right-handed alpha
Helix 17	17	B	51	58	Right-handed alpha
Helix 18	18	B	61	75	Right-handed alpha
Helix 19	19	B	82	85	Right-handed 310
Helix 20	20	B	90	93	Right-handed 310
Helix 21	21	B	94	101	Right-handed alpha
Helix 22	22	B	105	115	Right-handed alpha
Helix 23	23	B	124	138	Right-handed alpha
Helix 24	24	B	151	157	Right-handed 310
Helix 25	25	B	162	166	Right-handed 310
Helix 26	26	B	169	182	Right-handed alpha
Helix 27	27	B	196	203	Right-handed 310
Helix 28	28	B	218	230	Right-handed alpha
Helix 29	29	B	272	285	Right-handed alpha
Helix 30	30	B	291	312	Right-handed alpha
Helix 31	31	C	31	44	Right-handed alpha
Helix 32	32	C	50	56	Right-handed alpha
Helix 33	33	C	61	75	Right-handed alpha
Helix 34	34	C	82	85	Right-handed 310
Helix 35	35	C	92	102	Right-handed alpha
Helix 36	36	C	105	115	Right-handed alpha
Helix 37	37	C	124	137	Right-handed alpha
Helix 38	38	C	151	157	Right-handed 310
Helix 39	39	C	162	166	Right-handed 310
Helix 40	40	C	169	182	Right-handed alpha
Helix 41	41	C	197	203	Right-handed 310
Helix 42	42	C	218	231	Right-handed alpha
Helix 43	43	C	272	285	Right-handed alpha
Helix 44	44	C	291	312	Right-handed alpha
Helix 45	45	D	22	26	Right-handed 310
Helix 46	46	D	31	44	Right-handed alpha
Helix 47	47	D	50	58	Right-handed alpha
Helix 48	48	D	61	75	Right-handed alpha
Helix 49	49	D	82	84	Right-handed 310
Helix 50	50	D	92	102	Right-handed alpha
Helix 51	51	D	105	115	Right-handed alpha
Helix 52	52	D	124	137	Right-handed alpha
Helix 53	53	D	151	157	Right-handed 310
Helix 54	54	D	162	166	Right-handed 310
Helix 55	55	D	169	182	Right-handed alpha
Helix 56	56	D	196	203	Right-handed 310
Helix 57	57	D	218	231	Right-handed alpha
Helix 58	58	D	274	285	Right-handed alpha
Helix 59	59	D	291	312	Right-handed alpha

There are 12 sheets in PDB entry 3H9G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	78	80	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	17	20	anti-parallel
Strand 3	A	27	29	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	190	first strand
Strand 2	A	141	145	parallel
Strand 3	A	117	121	parallel
Strand 4	A	208	211	parallel
Strand 5	A	234	240	parallel
Strand 6	A	243	250	anti-parallel
Strand 7	A	321	325	anti-parallel
Strand 8	A	332	336	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	2	5	anti-parallel
Strand 3	B	78	80	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	17	20	anti-parallel
Strand 3	B	27	29	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	190	first strand
Strand 2	B	141	145	parallel
Strand 3	B	117	121	parallel
Strand 4	B	208	211	parallel
Strand 5	B	234	240	parallel
Strand 6	B	243	250	anti-parallel
Strand 7	B	321	326	anti-parallel
Strand 8	B	332	336	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	78	80	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	17	20	anti-parallel
Strand 3	C	27	29	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	190	first strand
Strand 2	C	141	145	parallel
Strand 3	C	117	121	parallel
Strand 4	C	208	211	parallel
Strand 5	C	234	240	parallel
Strand 6	C	243	250	anti-parallel
Strand 7	C	321	326	anti-parallel
Strand 8	C	332	336	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	78	80	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	17	20	anti-parallel
Strand 3	D	27	29	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	190	first strand
Strand 2	D	141	145	parallel
Strand 3	D	117	121	parallel
Strand 4	D	208	211	parallel
Strand 5	D	234	240	parallel
Strand 6	D	243	250	anti-parallel
Strand 7	D	321	326	anti-parallel
Strand 8	D	332	336	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3H9G

Analysis of interatomic Contacts of Structural Units in PDB entry:
3H9G