Analysis of interatomic Contacts of Structural Units in PDB entry:
3H9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H9M entry

There is 1 chain in PDB entry 3H9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3H9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 25Right-handed alpha
Helix 2
2
A
65 77Right-handed alpha
Helix 3
3
A
88 94Right-handed 310
Helix 4
4
A
133 143Right-handed alpha
Helix 5
5
A
161 178Right-handed alpha
Helix 6
6
A
197 209Right-handed alpha
Helix 7
7
A
268 288Right-handed alpha
Helix 8
8
A
325 333Right-handed alpha
Helix 9
9
A
336 339Right-handed 310
Helix 10
10
A
343 355Right-handed alpha
Helix 11
11
A
406 425Right-handed alpha
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There are 3 sheets in PDB entry 3H9M. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
125 130anti-parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
49 52anti-parallel
Strand 5
A
29 34anti-parallel
Strand 6
A
214 219anti-parallel
Strand 7
A
222 226anti-parallel
Strand 8
A
383 387anti-parallel
Strand 9
A
392 401anti-parallel
Strand 10
A
183 193anti-parallel
Strand 11
A
157 158anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
125 130anti-parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
49 52anti-parallel
Strand 5
A
29 34anti-parallel
Strand 6
A
214 219anti-parallel
Strand 7
A
222 226anti-parallel
Strand 8
A
383 387anti-parallel
Strand 9
A
392 401anti-parallel
Strand 10
A
183 193anti-parallel
Strand 11
A
341 342anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
110 114anti-parallel
Strand 3
A
82 86anti-parallel
Strand 4
A
365 369anti-parallel
Strand 5
A
375 378anti-parallel
Strand 6
A
231 236anti-parallel
Strand 7
A
239 242anti-parallel
Strand 8
A
310 319anti-parallel
Strand 9
A
296 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il