Analysis of interatomic Contacts of Structural Units in PDB entry:
3H9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H9Y entry

There are 3 chains in PDB entry 3H9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 336ASN 544
B
 GLY 335ASN 544
E
 VAL 336ASN 544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3H9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
344 350Right-handed alpha
Helix 2
2
A
406 413Right-handed alpha
Helix 3
3
A
486 488Right-handed 310
Helix 4
4
A
513 519Right-handed alpha
Helix 5
5
B
344 350Right-handed alpha
Helix 6
6
B
406 412Right-handed alpha
Helix 7
7
B
486 488Right-handed 310
Helix 8
8
B
513 519Right-handed alpha
Helix 9
9
E
344 350Right-handed alpha
Helix 10
10
E
406 412Right-handed alpha
Helix 11
11
E
486 488Right-handed 310
Helix 12
12
E
513 519Right-handed alpha
Back to top of page

There are 15 sheets in PDB entry 3H9Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
355 361anti-parallel
Strand 3
A
396 404anti-parallel
Strand 4
A
386 392anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 376first strand
Strand 2
A
416 421anti-parallel
Strand 3
A
430 433anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 449first strand
Strand 2
A
459 469anti-parallel
Strand 3
A
503 512anti-parallel
Strand 4
A
490 492anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 449first strand
Strand 2
A
459 469anti-parallel
Strand 3
A
503 512anti-parallel
Strand 4
A
496 497anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
A
475 480anti-parallel
Strand 3
A
522 527anti-parallel
Strand 4
A
536 541anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 341first strand
Strand 2
B
355 362anti-parallel
Strand 3
B
397 404anti-parallel
Strand 4
B
388 391anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 376first strand
Strand 2
B
416 421anti-parallel
Strand 3
B
429 433anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 449first strand
Strand 2
B
459 469anti-parallel
Strand 3
B
503 512anti-parallel
Strand 4
B
490 492anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 449first strand
Strand 2
B
459 469anti-parallel
Strand 3
B
503 512anti-parallel
Strand 4
B
496 497anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
483 484first strand
Strand 2
B
475 480anti-parallel
Strand 3
B
522 527anti-parallel
Strand 4
B
536 541anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
337 340first strand
Strand 2
E
355 362anti-parallel
Strand 3
E
397 404anti-parallel
Strand 4
E
386 391anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
371 376first strand
Strand 2
E
415 421anti-parallel
Strand 3
E
429 434anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
444 449first strand
Strand 2
E
459 469anti-parallel
Strand 3
E
503 512anti-parallel
Strand 4
E
490 492anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
444 449first strand
Strand 2
E
459 469anti-parallel
Strand 3
E
503 512anti-parallel
Strand 4
E
496 497anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
483 484first strand
Strand 2
E
475 480anti-parallel
Strand 3
E
522 527anti-parallel
Strand 4
E
536 541anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il