Analysis of interatomic Contacts of Structural Units in PDB entry:
3HAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HAG entry

There is 1 chain in PDB entry 3HAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 118SER 605
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3HAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
173 181Right-handed alpha
Helix 2
2
A
223 228Right-handed alpha
Helix 3
3
A
247 253Right-handed alpha
Helix 4
4
A
254 258Right-handed 310
Helix 5
5
A
267 272Right-handed 310
Helix 6
6
A
344 351Right-handed 310
Helix 7
7
A
376 381Right-handed alpha
Helix 8
8
A
384 389Right-handed alpha
Helix 9
9
A
415 422Right-handed alpha
Helix 10
10
A
515 518Right-handed 310
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There are 9 sheets in PDB entry 3HAG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 139first strand
Strand 2
A
296 308anti-parallel
Strand 3
A
184 196anti-parallel
Strand 4
A
242 245anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
296 308anti-parallel
Strand 3
A
184 196anti-parallel
Strand 4
A
259 260anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 159first strand
Strand 2
A
275 281anti-parallel
Strand 3
A
206 212anti-parallel
Strand 4
A
233 236anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
320 327anti-parallel
Strand 3
A
436 444anti-parallel
Strand 4
A
368 374anti-parallel
Strand 5
A
396 401anti-parallel
Strand 6
A
409 413anti-parallel
Strand 7
A
339 342anti-parallel
Strand 8
A
330 333anti-parallel
Strand 9
A
431 432anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
285 286anti-parallel
Strand 3
A
291 292anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
520 521parallel
Strand 3
A
524 525anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 510first strand
Strand 2
A
498 501anti-parallel
Strand 3
A
470 475anti-parallel
Strand 4
A
595 600anti-parallel
Strand 5
A
546 549anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 481first strand
Strand 2
A
492 495anti-parallel
Strand 3
A
579 582anti-parallel
Strand 4
A
568 571anti-parallel
Strand 5
A
539 540anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 531first strand
Strand 2
A
534 537anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il