Analysis of interatomic Contacts of Structural Units in PDB entry:
3HB9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HB9 entry

There are 2 chains in PDB entry 3HB9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 36	GLU 1178
B	GLN 36	ASP 240

There are193 helices in PDB entry 3HB9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	45	59	Right-handed alpha
Helix 2	2	A	68	72	Right-handed 310
Helix 3	3	A	74	80	Right-handed 310
Helix 4	4	A	91	95	Right-handed 310
Helix 5	5	A	98	109	Right-handed alpha
Helix 6	6	A	124	134	Right-handed alpha
Helix 7	7	A	142	150	Right-handed alpha
Helix 8	8	A	153	162	Right-handed alpha
Helix 9	9	A	222	226	Right-handed 310
Helix 10	10	A	284	302	Right-handed alpha
Helix 11	11	A	330	332	Right-handed 310
Helix 12	12	A	333	341	Right-handed alpha
Helix 13	13	A	343	353	Right-handed alpha
Helix 14	14	A	363	367	Right-handed 310
Helix 15	15	A	435	450	Right-handed alpha
Helix 16	16	A	458	467	Right-handed alpha
Helix 17	17	A	468	474	Right-handed alpha
Helix 18	18	A	477	481	Right-handed 310
Helix 19	19	A	484	488	Right-handed 310
Helix 20	20	A	495	511	Right-handed alpha
Helix 21	21	A	533	538	Right-handed alpha
Helix 22	22	A	540	560	Right-handed alpha
Helix 23	23	A	571	578	Right-handed alpha
Helix 24	24	A	583	590	Right-handed alpha
Helix 25	25	A	590	598	Right-handed alpha
Helix 26	26	A	610	618	Right-handed alpha
Helix 27	27	A	622	634	Right-handed alpha
Helix 28	28	A	655	670	Right-handed alpha
Helix 29	29	A	682	685	Right-handed 310
Helix 30	30	A	686	697	Right-handed alpha
Helix 31	31	A	719	733	Right-handed alpha
Helix 32	32	A	748	763	Right-handed alpha
Helix 33	33	A	778	789	Right-handed alpha
Helix 34	34	A	798	802	Right-handed 310
Helix 35	35	A	809	817	Right-handed alpha
Helix 36	36	A	827	845	Right-handed alpha
Helix 37	37	A	846	849	Right-handed 310
Helix 38	38	A	860	865	Right-handed alpha
Helix 39	39	A	869	881	Right-handed alpha
Helix 40	40	A	883	885	Right-handed 310
Helix 41	41	A	886	901	Right-handed alpha
Helix 42	42	A	909	925	Right-handed alpha
Helix 43	43	A	929	934	Right-handed alpha
Helix 44	44	A	935	938	Right-handed 310
Helix 45	45	A	941	949	Right-handed alpha
Helix 46	46	A	960	969	Right-handed alpha
Helix 47	47	A	977	981	Right-handed 310
Helix 48	48	A	986	998	Right-handed alpha
Helix 49	49	A	1003	1013	Right-handed alpha
Helix 50	50	A	1013	1028	Right-handed alpha
Helix 51	51	A	1029	1033	Right-handed 310
Helix 52	52	A	1034	1041	Right-handed alpha
Helix 53	53	B	45	59	Right-handed alpha
Helix 54	54	B	74	78	Right-handed 310
Helix 55	55	B	94	97	Right-handed 310
Helix 56	56	B	98	108	Right-handed alpha
Helix 57	57	B	124	134	Right-handed alpha
Helix 58	58	B	142	151	Right-handed alpha
Helix 59	59	B	153	161	Right-handed alpha
Helix 60	60	B	284	300	Right-handed alpha
Helix 61	61	B	330	332	Right-handed 310
Helix 62	62	B	333	341	Right-handed alpha
Helix 63	63	B	343	353	Right-handed alpha
Helix 64	64	B	435	450	Right-handed alpha
Helix 65	65	B	458	467	Right-handed alpha
Helix 66	66	B	468	473	Right-handed alpha
Helix 67	67	B	484	489	Right-handed 310
Helix 68	68	B	495	511	Right-handed alpha
Helix 69	69	B	533	538	Right-handed alpha
Helix 70	70	B	540	558	Right-handed alpha
Helix 71	71	B	571	578	Right-handed alpha
Helix 72	72	B	583	598	Right-handed alpha
Helix 73	73	B	610	618	Right-handed alpha
Helix 74	74	B	622	634	Right-handed alpha
Helix 75	75	B	655	670	Right-handed alpha
Helix 76	76	B	682	685	Right-handed 310
Helix 77	77	B	686	696	Right-handed alpha
Helix 78	78	B	719	733	Right-handed alpha
Helix 79	79	B	748	763	Right-handed alpha
Helix 80	80	B	778	789	Right-handed alpha
Helix 81	81	B	798	802	Right-handed 310
Helix 82	82	B	809	817	Right-handed alpha
Helix 83	83	B	827	844	Right-handed alpha
Helix 84	84	B	845	849	Right-handed 310
Helix 85	85	B	860	865	Right-handed alpha
Helix 86	86	B	869	880	Right-handed alpha
Helix 87	87	B	886	901	Right-handed alpha
Helix 88	88	B	909	924	Right-handed alpha
Helix 89	89	B	929	934	Right-handed alpha
Helix 90	90	B	935	938	Right-handed 310
Helix 91	91	B	941	949	Right-handed alpha
Helix 92	92	B	960	969	Right-handed alpha
Helix 93	93	B	977	982	Right-handed 310
Helix 94	94	B	986	998	Right-handed alpha
Helix 95	95	B	1003	1013	Right-handed alpha
Helix 96	96	B	1013	1028	Right-handed alpha
Helix 97	97	B	1029	1033	Right-handed 310
Helix 98	98	B	1034	1041	Right-handed alpha
Helix 99	99	C	45	59	Right-handed alpha
Helix 100	100	C	74	79	Right-handed alpha
Helix 101	101	C	92	97	Right-handed 310
Helix 102	102	C	98	109	Right-handed alpha
Helix 103	103	C	124	134	Right-handed alpha
Helix 104	104	C	142	150	Right-handed alpha
Helix 105	105	C	151	162	Right-handed alpha
Helix 106	106	C	176	186	Right-handed alpha
Helix 107	107	C	212	226	Right-handed alpha
Helix 108	108	C	284	302	Right-handed alpha
Helix 109	109	C	332	341	Right-handed alpha
Helix 110	110	C	343	354	Right-handed alpha
Helix 111	111	C	363	367	Right-handed 310
Helix 112	112	C	435	450	Right-handed alpha
Helix 113	113	C	458	468	Right-handed alpha
Helix 114	114	C	468	474	Right-handed alpha
Helix 115	115	C	479	484	Right-handed alpha
Helix 116	116	C	485	489	Right-handed 310
Helix 117	117	C	496	511	Right-handed alpha
Helix 118	118	C	533	538	Right-handed alpha
Helix 119	119	C	540	548	Right-handed alpha
Helix 120	120	C	548	560	Right-handed alpha
Helix 121	121	C	571	578	Right-handed alpha
Helix 122	122	C	583	590	Right-handed alpha
Helix 123	123	C	590	598	Right-handed alpha
Helix 124	124	C	610	618	Right-handed alpha
Helix 125	125	C	622	634	Right-handed alpha
Helix 126	126	C	655	670	Right-handed alpha
Helix 127	127	C	682	695	Right-handed alpha
Helix 128	128	C	719	733	Right-handed alpha
Helix 129	129	C	748	763	Right-handed alpha
Helix 130	130	C	778	789	Right-handed alpha
Helix 131	131	C	798	802	Right-handed 310
Helix 132	132	C	809	817	Right-handed alpha
Helix 133	133	C	827	842	Right-handed alpha
Helix 134	134	C	843	846	Right-handed 310
Helix 135	135	C	860	865	Right-handed alpha
Helix 136	136	C	869	881	Right-handed alpha
Helix 137	137	C	886	901	Right-handed alpha
Helix 138	138	C	909	923	Right-handed alpha
Helix 139	139	C	929	934	Right-handed alpha
Helix 140	140	C	941	948	Right-handed alpha
Helix 141	141	C	960	968	Right-handed alpha
Helix 142	142	C	986	998	Right-handed alpha
Helix 143	143	C	1003	1013	Right-handed alpha
Helix 144	144	C	1013	1028	Right-handed alpha
Helix 145	145	C	1029	1033	Right-handed 310
Helix 146	146	C	1034	1041	Right-handed alpha
Helix 147	147	D	45	59	Right-handed alpha
Helix 148	148	D	68	72	Right-handed 310
Helix 149	149	D	74	79	Right-handed alpha
Helix 150	150	D	98	109	Right-handed alpha
Helix 151	151	D	124	133	Right-handed alpha
Helix 152	152	D	142	149	Right-handed alpha
Helix 153	153	D	151	161	Right-handed alpha
Helix 154	154	D	284	302	Right-handed alpha
Helix 155	155	D	332	341	Right-handed alpha
Helix 156	156	D	343	353	Right-handed alpha
Helix 157	157	D	363	367	Right-handed 310
Helix 158	158	D	435	450	Right-handed alpha
Helix 159	159	D	458	468	Right-handed alpha
Helix 160	160	D	468	473	Right-handed alpha
Helix 161	161	D	484	488	Right-handed 310
Helix 162	162	D	495	511	Right-handed alpha
Helix 163	163	D	533	538	Right-handed alpha
Helix 164	164	D	540	560	Right-handed alpha
Helix 165	165	D	571	578	Right-handed alpha
Helix 166	166	D	583	590	Right-handed alpha
Helix 167	167	D	590	598	Right-handed alpha
Helix 168	168	D	610	618	Right-handed alpha
Helix 169	169	D	622	634	Right-handed alpha
Helix 170	170	D	655	670	Right-handed alpha
Helix 171	171	D	682	685	Right-handed 310
Helix 172	172	D	686	696	Right-handed alpha
Helix 173	173	D	719	733	Right-handed alpha
Helix 174	174	D	748	763	Right-handed alpha
Helix 175	175	D	778	790	Right-handed alpha
Helix 176	176	D	798	802	Right-handed 310
Helix 177	177	D	809	817	Right-handed alpha
Helix 178	178	D	827	842	Right-handed alpha
Helix 179	179	D	843	849	Right-handed 310
Helix 180	180	D	860	865	Right-handed alpha
Helix 181	181	D	872	880	Right-handed alpha
Helix 182	182	D	886	901	Right-handed alpha
Helix 183	183	D	909	924	Right-handed alpha
Helix 184	184	D	929	934	Right-handed alpha
Helix 185	185	D	935	938	Right-handed 310
Helix 186	186	D	941	949	Right-handed alpha
Helix 187	187	D	960	969	Right-handed alpha
Helix 188	188	D	977	982	Right-handed 310
Helix 189	189	D	986	998	Right-handed alpha
Helix 190	190	D	1003	1013	Right-handed alpha
Helix 191	191	D	1013	1028	Right-handed alpha
Helix 192	192	D	1029	1033	Right-handed 310
Helix 193	193	D	1034	1041	Right-handed alpha

There are 28 sheets in PDB entry 3HB9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	62	67	parallel
Strand 3	A	39	42	parallel
Strand 4	A	113	115	parallel
Strand 5	A	137	138	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	191	195	anti-parallel
Strand 3	A	233	236	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	264	first strand
Strand 2	A	244	251	anti-parallel
Strand 3	A	306	315	anti-parallel
Strand 4	A	319	326	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	278	first strand
Strand 2	A	372	378	anti-parallel
Strand 3	A	427	433	anti-parallel
Strand 4	A	405	409	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	567	first strand
Strand 2	A	603	608	parallel
Strand 3	A	638	644	parallel
Strand 4	A	673	677	parallel
Strand 5	A	699	705	parallel
Strand 6	A	737	742	parallel
Strand 7	A	768	772	parallel
Strand 8	A	793	796	parallel
Strand 9	A	564	567	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1047	1053	first strand
Strand 2	A	1056	1065	anti-parallel
Strand 3	A	1073	1080	anti-parallel
Strand 4	A	1083	1090	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1111	1113	first strand
Strand 2	A	1173	1177	anti-parallel
Strand 3	A	1155	1160	anti-parallel
Strand 4	A	1130	1131	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1146	1150	first strand
Strand 2	A	1136	1141	anti-parallel
Strand 3	A	1118	1123	anti-parallel
Strand 4	A	1167	1168	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	62	67	parallel
Strand 3	B	39	42	parallel
Strand 4	B	113	115	parallel
Strand 5	B	137	138	parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	326	first strand
Strand 2	B	306	314	anti-parallel
Strand 3	B	243	251	anti-parallel
Strand 4	B	257	268	anti-parallel
Strand 5	B	273	278	anti-parallel
Strand 6	B	372	378	anti-parallel
Strand 7	B	427	433	anti-parallel
Strand 8	B	406	409	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	567	first strand
Strand 2	B	603	608	parallel
Strand 3	B	638	644	parallel
Strand 4	B	673	677	parallel
Strand 5	B	699	705	parallel
Strand 6	B	737	742	parallel
Strand 7	B	768	772	parallel
Strand 8	B	793	796	parallel
Strand 9	B	564	567	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1047	1051	first strand
Strand 2	B	1057	1065	anti-parallel
Strand 3	B	1073	1080	anti-parallel
Strand 4	B	1083	1090	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1111	1113	first strand
Strand 2	B	1173	1177	anti-parallel
Strand 3	B	1155	1160	anti-parallel
Strand 4	B	1130	1131	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1146	1150	first strand
Strand 2	B	1136	1141	anti-parallel
Strand 3	B	1118	1123	anti-parallel
Strand 4	B	1167	1168	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	85	first strand
Strand 2	C	62	67	parallel
Strand 3	C	39	42	parallel
Strand 4	C	113	115	parallel
Strand 5	C	137	138	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	207	first strand
Strand 2	C	191	194	anti-parallel
Strand 3	C	234	237	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	326	first strand
Strand 2	C	306	315	anti-parallel
Strand 3	C	243	251	anti-parallel
Strand 4	C	257	268	anti-parallel
Strand 5	C	273	278	anti-parallel
Strand 6	C	372	379	anti-parallel
Strand 7	C	425	433	anti-parallel
Strand 8	C	405	409	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	394	first strand
Strand 2	C	416	417	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	398	first strand
Strand 2	C	451	453	anti-parallel

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There are 9 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	567	first strand
Strand 2	C	603	608	parallel
Strand 3	C	638	644	parallel
Strand 4	C	673	677	parallel
Strand 5	C	699	705	parallel
Strand 6	C	737	742	parallel
Strand 7	C	768	772	parallel
Strand 8	C	793	796	parallel
Strand 9	C	564	567	parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1046	1053	first strand
Strand 2	C	1056	1065	anti-parallel
Strand 3	C	1073	1080	anti-parallel
Strand 4	C	1084	1090	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	85	first strand
Strand 2	D	62	67	parallel
Strand 3	D	39	42	parallel
Strand 4	D	113	115	parallel
Strand 5	D	137	138	parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	264	first strand
Strand 2	D	243	251	anti-parallel
Strand 3	D	306	314	anti-parallel
Strand 4	D	320	326	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	278	first strand
Strand 2	D	372	378	anti-parallel
Strand 3	D	427	433	anti-parallel
Strand 4	D	405	409	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	393	first strand
Strand 2	D	417	418	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	396	398	first strand
Strand 2	D	451	453	anti-parallel

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There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	567	first strand
Strand 2	D	603	608	parallel
Strand 3	D	638	644	parallel
Strand 4	D	673	677	parallel
Strand 5	D	699	705	parallel
Strand 6	D	737	742	parallel
Strand 7	D	768	772	parallel
Strand 8	D	793	796	parallel
Strand 9	D	564	567	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1047	1051	first strand
Strand 2	D	1057	1065	anti-parallel
Strand 3	D	1073	1080	anti-parallel
Strand 4	D	1083	1090	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HB9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HB9