Analysis of interatomic Contacts of Structural Units in PDB entry:
3HBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HBC entry

There is 1 chain in PDB entry 3HBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 23SER 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3HBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
125 134Right-handed alpha
Helix 2
2
A
136 145Right-handed alpha
Helix 3
3
A
202 217Right-handed alpha
Helix 4
4
A
227 240Right-handed alpha
Helix 5
5
A
247 262Right-handed alpha
Helix 6
6
A
308 310Right-handed 310
Helix 7
7
A
334 337Right-handed 310
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There are 4 sheets in PDB entry 3HBC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
38 46anti-parallel
Strand 4
A
278 286anti-parallel
Strand 5
A
291 296anti-parallel
Strand 6
A
303 306anti-parallel
Strand 7
A
331 332parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
176 182anti-parallel
Strand 3
A
165 170anti-parallel
Strand 4
A
100 105anti-parallel
Strand 5
A
89 95anti-parallel
Strand 6
A
80 85anti-parallel
Strand 7
A
53 57anti-parallel
Strand 8
A
319 321anti-parallel
Strand 9
A
338 339anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
73 75anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
150 152parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il