Analysis of interatomic Contacts of Structural Units in PDB entry:
3HBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HBJ entry

There is 1 chain in PDB entry 3HBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10SER 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 3HBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 41Right-handed alpha
Helix 2
2
A
52 59Right-handed alpha
Helix 3
3
A
89 115Right-handed alpha
Helix 4
4
A
129 138Right-handed alpha
Helix 5
5
A
148 157Right-handed alpha
Helix 6
6
A
157 164Right-handed alpha
Helix 7
7
A
166 171Right-handed alpha
Helix 8
8
A
200 213Right-handed alpha
Helix 9
9
A
214 216Right-handed 310
Helix 10
10
A
228 239Right-handed alpha
Helix 11
11
A
247 252Right-handed alpha
Helix 12
12
A
262 269Right-handed alpha
Helix 13
13
A
287 299Right-handed alpha
Helix 14
14
A
318 325Right-handed alpha
Helix 15
15
A
336 343Right-handed alpha
Helix 16
16
A
354 365Right-handed alpha
Helix 17
17
A
376 387Right-handed alpha
Helix 18
18
A
395 398Right-handed 310
Helix 19
19
A
400 412Right-handed alpha
Helix 20
20
A
415 436Right-handed alpha
Helix 21
21
A
439 453Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3HBJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
45 51parallel
Strand 3
A
15 19parallel
Strand 4
A
120 124parallel
Strand 5
A
140 145parallel
Strand 6
A
219 221parallel
Strand 7
A
242 244parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
305 308parallel
Strand 3
A
275 279parallel
Strand 4
A
346 351parallel
Strand 5
A
368 370parallel
Strand 6
A
391 393parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il