Analysis of interatomic Contacts of Structural Units in PDB entry:
3HD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HD5 entry

There are 3 chains in PDB entry 3HD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 28GLU 209
B
 GLN 31GLU 209
C
 GLY 29GLU 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3HD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 74Right-handed alpha
Helix 2
2
A
89 91Right-handed 310
Helix 3
3
A
92 105Right-handed alpha
Helix 4
4
A
109 120Right-handed alpha
Helix 5
5
A
127 138Right-handed alpha
Helix 6
6
A
141 150Right-handed alpha
Helix 7
7
A
151 168Right-handed alpha
Helix 8
8
A
190 194Right-handed 310
Helix 9
9
A
195 209Right-handed alpha
Helix 10
10
B
58 75Right-handed alpha
Helix 11
11
B
89 91Right-handed 310
Helix 12
12
B
92 105Right-handed alpha
Helix 13
13
B
109 120Right-handed alpha
Helix 14
14
B
127 137Right-handed alpha
Helix 15
15
B
141 150Right-handed alpha
Helix 16
16
B
151 168Right-handed alpha
Helix 17
17
B
185 190Right-handed alpha
Helix 18
18
B
192 209Right-handed alpha
Helix 19
19
C
58 75Right-handed alpha
Helix 20
20
C
89 91Right-handed 310
Helix 21
21
C
92 105Right-handed alpha
Helix 22
22
C
110 120Right-handed alpha
Helix 23
23
C
127 138Right-handed alpha
Helix 24
24
C
141 151Right-handed alpha
Helix 25
25
C
151 168Right-handed alpha
Helix 26
26
C
192 209Right-handed alpha
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There are 3 sheets in PDB entry 3HD5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
182 184anti-parallel
Strand 3
A
175 178anti-parallel
Strand 4
A
48 54anti-parallel
Strand 5
A
79 85parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
182 184anti-parallel
Strand 3
B
175 178anti-parallel
Strand 4
B
48 54anti-parallel
Strand 5
B
79 85parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 35first strand
Strand 2
C
182 184anti-parallel
Strand 3
C
175 178anti-parallel
Strand 4
C
48 54anti-parallel
Strand 5
C
79 85parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il