Analysis of interatomic Contacts of Structural Units in PDB entry:
3HDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HDJ entry

There are 2 chains in PDB entry 3HDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0PRO 310
B
 ALA 0PRO 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3HDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 13Right-handed alpha
Helix 2
2
A
14 31Right-handed alpha
Helix 3
3
A
57 59Right-handed 310
Helix 4
4
A
94 114Right-handed alpha
Helix 5
5
A
127 141Right-handed alpha
Helix 6
6
A
154 166Right-handed alpha
Helix 7
7
A
173 181Right-handed alpha
Helix 8
8
A
196 200Right-handed 310
Helix 9
9
A
220 227Right-handed alpha
Helix 10
10
A
234 242Right-handed alpha
Helix 11
11
A
242 248Right-handed alpha
Helix 12
12
A
249 252Right-handed 310
Helix 13
13
A
253 257Right-handed alpha
Helix 14
14
A
261 266Right-handed alpha
Helix 15
15
A
286 306Right-handed alpha
Helix 16
16
B
5 13Right-handed alpha
Helix 17
17
B
14 31Right-handed alpha
Helix 18
18
B
57 59Right-handed 310
Helix 19
19
B
94 114Right-handed alpha
Helix 20
20
B
127 141Right-handed alpha
Helix 21
21
B
154 166Right-handed alpha
Helix 22
22
B
173 181Right-handed alpha
Helix 23
23
B
196 200Right-handed 310
Helix 24
24
B
220 227Right-handed alpha
Helix 25
25
B
234 242Right-handed alpha
Helix 26
26
B
242 247Right-handed alpha
Helix 27
27
B
249 252Right-handed 310
Helix 28
28
B
253 257Right-handed alpha
Helix 29
29
B
261 266Right-handed alpha
Helix 30
30
B
286 306Right-handed alpha
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There are 4 sheets in PDB entry 3HDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
88 92parallel
Strand 3
A
73 82anti-parallel
Strand 4
A
61 70anti-parallel
Strand 5
A
47 56anti-parallel
Strand 6
A
35 44anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
145 149parallel
Strand 3
A
120 124parallel
Strand 4
A
183 186parallel
Strand 5
A
205 208parallel
Strand 6
A
279 282parallel
Strand 7
A
229 232parallel
Strand 8
A
258 260parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
88 93parallel
Strand 3
B
73 82anti-parallel
Strand 4
B
61 70anti-parallel
Strand 5
B
47 56anti-parallel
Strand 6
B
35 44anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
145 149parallel
Strand 3
B
120 124parallel
Strand 4
B
183 186parallel
Strand 5
B
205 208parallel
Strand 6
B
279 282parallel
Strand 7
B
229 232parallel
Strand 8
B
258 260parallel
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