Analysis of interatomic Contacts of Structural Units in PDB entry:
3HDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HDX entry

There is 1 chain in PDB entry 3HDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 39LYS 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3HDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 65Right-handed alpha
Helix 2
2
A
67 74Right-handed alpha
Helix 3
3
A
85 93Right-handed alpha
Helix 4
4
A
100 108Right-handed alpha
Helix 5
5
A
109 126Right-handed alpha
Helix 6
6
A
126 133Right-handed alpha
Helix 7
7
A
137 164Right-handed alpha
Helix 8
8
A
185 204Right-handed alpha
Helix 9
9
A
219 224Right-handed 310
Helix 10
10
A
229 244Right-handed alpha
Helix 11
11
A
246 261Right-handed alpha
Helix 12
12
A
262 265Right-handed 310
Helix 13
13
A
270 276Right-handed alpha
Helix 14
14
A
287 291Right-handed 310
Helix 15
15
A
309 315Right-handed alpha
Helix 16
16
A
330 338Right-handed alpha
Helix 17
17
A
396 411Right-handed alpha
Helix 18
18
A
413 426Right-handed alpha
Helix 19
19
A
434 440Right-handed alpha
Helix 20
20
A
442 458Right-handed alpha
Helix 21
21
A
463 476Right-handed alpha
Helix 22
22
A
478 487Right-handed alpha
Helix 23
23
A
495 502Right-handed alpha
Helix 24
24
A
508 512Right-handed 310
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There are 3 sheets in PDB entry 3HDX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
327 328anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
392 395anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
368 369anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il