Analysis of interatomic Contacts of Structural Units in PDB entry:
3HFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HFS entry

There are 2 chains in PDB entry 3HFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 7GLN 337
B
 LYS 9GLN 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3HFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
45 57Right-handed alpha
Helix 3
3
A
74 79Right-handed alpha
Helix 4
4
A
103 119Right-handed alpha
Helix 5
5
A
131 140Right-handed alpha
Helix 6
6
A
173 186Right-handed alpha
Helix 7
7
A
208 220Right-handed alpha
Helix 8
8
A
221 235Right-handed alpha
Helix 9
9
A
243 256Right-handed alpha
Helix 10
10
A
271 281Right-handed alpha
Helix 11
11
A
305 311Right-handed alpha
Helix 12
12
A
318 333Right-handed alpha
Helix 13
13
B
19 32Right-handed alpha
Helix 14
14
B
45 56Right-handed alpha
Helix 15
15
B
57 59Right-handed 310
Helix 16
16
B
70 76Right-handed alpha
Helix 17
17
B
103 117Right-handed alpha
Helix 18
18
B
131 140Right-handed alpha
Helix 19
19
B
173 186Right-handed alpha
Helix 20
20
B
208 220Right-handed alpha
Helix 21
21
B
221 235Right-handed alpha
Helix 22
22
B
243 256Right-handed alpha
Helix 23
23
B
271 283Right-handed alpha
Helix 24
24
B
305 312Right-handed alpha
Helix 25
25
B
318 333Right-handed alpha
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There are 4 sheets in PDB entry 3HFS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
11 14parallel
Strand 3
A
83 87parallel
Strand 4
A
125 129parallel
Strand 5
A
190 195parallel
Strand 6
A
261 265parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
238 242parallel
Strand 3
A
268 270anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
35 40parallel
Strand 3
B
11 14parallel
Strand 4
B
83 87parallel
Strand 5
B
125 129parallel
Strand 6
B
190 195parallel
Strand 7
B
262 265parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
B
238 242parallel
Strand 3
B
268 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il