Analysis of interatomic Contacts of Structural Units in PDB entry:
3HHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HHF entry

There are 2 chains in PDB entry 3HHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 91GLY 294
A
 PRO 91GLY 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3HHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
100 107Right-handed alpha
Helix 2
2
B
107 119Right-handed alpha
Helix 3
3
B
132 137Right-handed alpha
Helix 4
4
B
169 177Right-handed alpha
Helix 5
5
B
181 188Right-handed 310
Helix 6
6
B
196 199Right-handed 310
Helix 7
7
B
222 232Right-handed alpha
Helix 8
8
B
241 250Right-handed alpha
Helix 9
9
B
275 278Right-handed 310
Helix 10
10
B
279 294Right-handed alpha
Helix 11
11
A
100 107Right-handed alpha
Helix 12
12
A
107 119Right-handed alpha
Helix 13
13
A
132 137Right-handed alpha
Helix 14
14
A
169 177Right-handed alpha
Helix 15
15
A
182 188Right-handed 310
Helix 16
16
A
196 199Right-handed 310
Helix 17
17
A
222 232Right-handed alpha
Helix 18
18
A
241 250Right-handed alpha
Helix 19
19
A
273 278Right-handed 310
Helix 20
20
A
279 294Right-handed alpha
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There are 6 sheets in PDB entry 3HHF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 162first strand
Strand 2
B
266 273anti-parallel
Strand 3
B
142 145anti-parallel
Strand 4
B
93 99parallel
Strand 5
B
122 127parallel
Strand 6
A
219 220parallel
Strand 7
A
192 193parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 240first strand
Strand 2
B
164 168anti-parallel
Strand 3
B
254 256anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
219 220parallel
Strand 3
A
122 128parallel
Strand 4
A
93 99parallel
Strand 5
A
142 145parallel
Strand 6
A
266 272anti-parallel
Strand 7
A
155 162anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 205first strand
Strand 2
B
211 213anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
164 168anti-parallel
Strand 3
A
254 256anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 205first strand
Strand 2
A
211 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il