Analysis of interatomic Contacts of Structural Units in PDB entry:
3HHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HHM entry

There are 2 chains in PDB entry 3HHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -27ILE 1062
B
 MET 326GLN 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 3HHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 53Right-handed alpha
Helix 2
2
A
54 56Right-handed 310
Helix 3
3
A
58 62Right-handed 310
Helix 4
4
A
64 68Right-handed 310
Helix 5
5
A
115 122Right-handed alpha
Helix 6
6
A
133 143Right-handed alpha
Helix 7
7
A
143 156Right-handed alpha
Helix 8
8
A
157 167Right-handed alpha
Helix 9
9
A
178 183Right-handed alpha
Helix 10
10
A
216 232Right-handed alpha
Helix 11
11
A
237 247Right-handed alpha
Helix 12
12
A
266 269Right-handed 310
Helix 13
13
A
270 280Right-handed alpha
Helix 14
14
A
290 295Right-handed alpha
Helix 15
15
A
328 330Right-handed 310
Helix 16
16
A
394 396Right-handed 310
Helix 17
17
A
488 504Right-handed alpha
Helix 18
18
A
526 533Right-handed 310
Helix 19
19
A
544 554Right-handed alpha
Helix 20
20
A
554 559Right-handed alpha
Helix 21
21
A
560 563Right-handed 310
Helix 22
22
A
564 570Right-handed alpha
Helix 23
23
A
576 589Right-handed alpha
Helix 24
24
A
594 601Right-handed alpha
Helix 25
25
A
608 623Right-handed alpha
Helix 26
26
A
624 638Right-handed alpha
Helix 27
27
A
639 642Right-handed 310
Helix 28
28
A
647 658Right-handed alpha
Helix 29
29
A
660 673Right-handed alpha
Helix 30
30
A
680 695Right-handed alpha
Helix 31
31
A
697 719Right-handed alpha
Helix 32
32
A
727 741Right-handed alpha
Helix 33
33
A
741 748Right-handed alpha
Helix 34
34
A
765 769Right-handed 310
Helix 35
35
A
807 826Right-handed alpha
Helix 36
36
A
857 863Right-handed alpha
Helix 37
37
A
875 883Right-handed alpha
Helix 38
38
A
889 912Right-handed alpha
Helix 39
39
A
957 964Right-handed alpha
Helix 40
40
A
974 994Right-handed alpha
Helix 41
41
A
996 1005Right-handed alpha
Helix 42
42
A
1006 1008Right-handed 310
Helix 43
43
A
1015 1026Right-handed alpha
Helix 44
44
A
1031 1046Right-handed alpha
Helix 45
45
B
326 331Right-handed 310
Helix 46
46
B
339 347Right-handed alpha
Helix 47
47
B
401 411Right-handed alpha
Helix 48
48
B
412 416Right-handed 310
Helix 49
49
B
443 447Right-handed 310
Helix 50
50
B
450 513Right-handed alpha
Helix 51
51
B
519 578Right-handed alpha
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There are 10 sheets in PDB entry 3HHM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 82anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 212first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
356 361anti-parallel
Strand 3
A
401 406anti-parallel
Strand 4
A
423 428anti-parallel
Strand 5
A
446 447anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 753first strand
Strand 2
A
756 761anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 783anti-parallel
Strand 3
A
797 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 336first strand
Strand 2
B
354 359parallel
Strand 3
B
368 374anti-parallel
Strand 4
B
377 383anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 336first strand
Strand 2
B
354 359parallel
Strand 3
B
426 427parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il