Analysis of interatomic Contacts of Structural Units in PDB entry:
3HHS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HHS entry

There are 2 chains in PDB entry 3HHS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3PRO 693
B
 ASP 3GLU 680
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3HHS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 11Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
38 42Right-handed 310
Helix 4
4
A
44 54Right-handed alpha
Helix 5
5
A
75 79Right-handed 310
Helix 6
6
A
89 106Right-handed alpha
Helix 7
7
A
110 125Right-handed alpha
Helix 8
8
A
126 141Right-handed alpha
Helix 9
9
A
151 156Right-handed alpha
Helix 10
10
A
157 160Right-handed 310
Helix 11
11
A
164 176Right-handed alpha
Helix 12
12
A
197 201Right-handed 310
Helix 13
13
A
202 207Right-handed alpha
Helix 14
14
A
208 222Right-handed alpha
Helix 15
15
A
228 233Right-handed alpha
Helix 16
16
A
236 258Right-handed alpha
Helix 17
17
A
306 309Right-handed 310
Helix 18
18
A
313 331Right-handed alpha
Helix 19
19
A
344 354Right-handed alpha
Helix 20
20
A
360 365Right-handed alpha
Helix 21
21
A
366 377Right-handed alpha
Helix 22
22
A
390 394Right-handed 310
Helix 23
23
A
397 400Right-handed 310
Helix 24
24
A
401 420Right-handed alpha
Helix 25
25
A
429 434Right-handed alpha
Helix 26
26
A
467 470Right-handed 310
Helix 27
27
A
523 528Right-handed alpha
Helix 28
28
A
553 555Right-handed 310
Helix 29
29
A
560 565Right-handed alpha
Helix 30
30
A
593 595Right-handed 310
Helix 31
31
A
615 619Right-handed alpha
Helix 32
32
A
633 638Right-handed alpha
Helix 33
33
A
663 668Right-handed alpha
Helix 34
34
B
3 8Right-handed alpha
Helix 35
35
B
9 13Right-handed 310
Helix 36
36
B
33 37Right-handed 310
Helix 37
37
B
38 43Right-handed 310
Helix 38
38
B
44 54Right-handed alpha
Helix 39
39
B
72 76Right-handed 310
Helix 40
40
B
86 103Right-handed alpha
Helix 41
41
B
105 118Right-handed alpha
Helix 42
42
B
121 136Right-handed alpha
Helix 43
43
B
137 140Right-handed 310
Helix 44
44
B
146 151Right-handed alpha
Helix 45
45
B
152 155Right-handed 310
Helix 46
46
B
158 171Right-handed alpha
Helix 47
47
B
191 195Right-handed 310
Helix 48
48
B
196 201Right-handed alpha
Helix 49
49
B
202 216Right-handed alpha
Helix 50
50
B
222 227Right-handed alpha
Helix 51
51
B
230 253Right-handed alpha
Helix 52
52
B
300 303Right-handed 310
Helix 53
53
B
307 325Right-handed alpha
Helix 54
54
B
341 352Right-handed alpha
Helix 55
55
B
358 363Right-handed alpha
Helix 56
56
B
364 375Right-handed alpha
Helix 57
57
B
388 392Right-handed 310
Helix 58
58
B
395 398Right-handed 310
Helix 59
59
B
399 418Right-handed alpha
Helix 60
60
B
424 429Right-handed alpha
Helix 61
61
B
517 522Right-handed alpha
Helix 62
62
B
523 525Right-handed 310
Helix 63
63
B
547 549Right-handed 310
Helix 64
64
B
554 558Right-handed 310
Helix 65
65
B
587 589Right-handed 310
Helix 66
66
B
610 612Right-handed 310
Helix 67
67
B
625 630Right-handed alpha
Helix 68
68
B
656 661Right-handed alpha
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There are 13 sheets in PDB entry 3HHS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
60 63parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
479 487parallel
Strand 3
A
454 465anti-parallel
Strand 4
A
673 688parallel
Strand 5
A
604 614anti-parallel
Strand 6
A
504 513anti-parallel
Strand 7
A
532 540anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 305first strand
Strand 2
A
310 312anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
340 342anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 447first strand
Strand 2
A
490 498anti-parallel
Strand 3
A
544 551anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
590 591parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
58 60parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
472 480parallel
Strand 3
B
447 458anti-parallel
Strand 4
B
665 679parallel
Strand 5
B
598 608anti-parallel
Strand 6
B
497 507anti-parallel
Strand 7
B
526 535anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
283 284anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
304 306anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 328first strand
Strand 2
B
334 336anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 440first strand
Strand 2
B
484 491anti-parallel
Strand 3
B
538 545anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 553first strand
Strand 2
B
584 585parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il