Analysis of interatomic Contacts of Structural Units in PDB entry:
3HHZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HHZ entry

There are 11 chains in PDB entry 3HHZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 193	LEU 265
B	ALA 193	LEU 265
C	ALA 193	LEU 265
D	ALA 193	LEU 265
E	ALA 193	LEU 265
K	SER 2	LYS 422
L	SER 2	LYS 422
M	SER 2	LYS 422
N	SER 2	LYS 422
O	SER 2	LYS 422
R	U 1	U 45

There are115 helices in PDB entry 3HHZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	220	225	Right-handed alpha
Helix 2	2	A	228	235	Right-handed alpha
Helix 3	3	A	242	248	Right-handed alpha
Helix 4	4	A	257	263	Right-handed alpha
Helix 5	5	B	243	248	Right-handed alpha
Helix 6	6	B	257	263	Right-handed alpha
Helix 7	7	C	196	202	Right-handed 310
Helix 8	8	C	221	225	Right-handed alpha
Helix 9	9	C	228	234	Right-handed alpha
Helix 10	10	C	242	253	Right-handed alpha
Helix 11	11	C	255	263	Right-handed alpha
Helix 12	12	D	241	250	Right-handed alpha
Helix 13	13	E	197	201	Right-handed 310
Helix 14	14	E	220	225	Right-handed alpha
Helix 15	15	E	227	235	Right-handed alpha
Helix 16	16	E	241	250	Right-handed alpha
Helix 17	17	E	255	261	Right-handed alpha
Helix 18	18	K	9	11	Right-handed 310
Helix 19	19	K	27	35	Right-handed alpha
Helix 20	20	K	48	60	Right-handed alpha
Helix 21	21	K	65	78	Right-handed alpha
Helix 22	22	K	133	139	Right-handed alpha
Helix 23	23	K	139	144	Right-handed alpha
Helix 24	24	K	151	160	Right-handed alpha
Helix 25	25	K	160	165	Right-handed alpha
Helix 26	26	K	182	186	Right-handed 310
Helix 27	27	K	188	206	Right-handed alpha
Helix 28	28	K	210	215	Right-handed 310
Helix 29	29	K	217	221	Right-handed 310
Helix 30	30	K	225	239	Right-handed alpha
Helix 31	31	K	243	248	Right-handed alpha
Helix 32	32	K	251	263	Right-handed alpha
Helix 33	33	K	274	278	Right-handed 310
Helix 34	34	K	294	308	Right-handed alpha
Helix 35	35	K	312	316	Right-handed 310
Helix 36	36	K	323	341	Right-handed alpha
Helix 37	37	K	374	384	Right-handed alpha
Helix 38	38	K	390	402	Right-handed alpha
Helix 39	39	K	411	421	Right-handed alpha
Helix 40	40	L	27	33	Right-handed 310
Helix 41	41	L	50	60	Right-handed alpha
Helix 42	42	L	71	75	Right-handed 310
Helix 43	43	L	133	140	Right-handed alpha
Helix 44	44	L	141	146	Right-handed alpha
Helix 45	45	L	155	157	Right-handed 310
Helix 46	46	L	158	163	Right-handed alpha
Helix 47	47	L	189	205	Right-handed alpha
Helix 48	48	L	210	215	Right-handed 310
Helix 49	49	L	217	221	Right-handed 310
Helix 50	50	L	228	239	Right-handed alpha
Helix 51	51	L	241	248	Right-handed alpha
Helix 52	52	L	251	262	Right-handed alpha
Helix 53	53	L	274	278	Right-handed 310
Helix 54	54	L	290	293	Right-handed 310
Helix 55	55	L	294	308	Right-handed alpha
Helix 56	56	L	323	341	Right-handed alpha
Helix 57	57	L	374	383	Right-handed alpha
Helix 58	58	L	384	386	Right-handed 310
Helix 59	59	L	390	402	Right-handed alpha
Helix 60	60	L	411	421	Right-handed alpha
Helix 61	61	M	27	32	Right-handed alpha
Helix 62	62	M	50	58	Right-handed alpha
Helix 63	63	M	65	78	Right-handed alpha
Helix 64	64	M	133	141	Right-handed alpha
Helix 65	65	M	151	163	Right-handed alpha
Helix 66	66	M	183	188	Right-handed 310
Helix 67	67	M	191	205	Right-handed alpha
Helix 68	68	M	208	215	Right-handed 310
Helix 69	69	M	217	221	Right-handed 310
Helix 70	70	M	225	239	Right-handed alpha
Helix 71	71	M	241	248	Right-handed alpha
Helix 72	72	M	251	263	Right-handed alpha
Helix 73	73	M	274	278	Right-handed 310
Helix 74	74	M	294	308	Right-handed alpha
Helix 75	75	M	312	316	Right-handed 310
Helix 76	76	M	323	341	Right-handed alpha
Helix 77	77	M	374	385	Right-handed alpha
Helix 78	78	M	390	402	Right-handed alpha
Helix 79	79	M	411	421	Right-handed alpha
Helix 80	80	N	27	35	Right-handed alpha
Helix 81	81	N	65	76	Right-handed alpha
Helix 82	82	N	133	145	Right-handed alpha
Helix 83	83	N	152	157	Right-handed alpha
Helix 84	84	N	191	205	Right-handed alpha
Helix 85	85	N	210	212	Right-handed 310
Helix 86	86	N	213	218	Right-handed alpha
Helix 87	87	N	219	221	Right-handed 310
Helix 88	88	N	225	239	Right-handed alpha
Helix 89	89	N	243	248	Right-handed alpha
Helix 90	90	N	251	263	Right-handed alpha
Helix 91	91	N	274	278	Right-handed 310
Helix 92	92	N	294	308	Right-handed alpha
Helix 93	93	N	312	316	Right-handed 310
Helix 94	94	N	323	341	Right-handed alpha
Helix 95	95	N	374	385	Right-handed alpha
Helix 96	96	N	390	402	Right-handed alpha
Helix 97	97	N	411	421	Right-handed alpha
Helix 98	98	O	27	35	Right-handed alpha
Helix 99	99	O	50	59	Right-handed alpha
Helix 100	100	O	65	77	Right-handed alpha
Helix 101	101	O	133	144	Right-handed alpha
Helix 102	102	O	151	165	Right-handed alpha
Helix 103	103	O	188	205	Right-handed alpha
Helix 104	104	O	208	216	Right-handed 310
Helix 105	105	O	217	221	Right-handed 310
Helix 106	106	O	225	239	Right-handed alpha
Helix 107	107	O	241	248	Right-handed alpha
Helix 108	108	O	251	263	Right-handed alpha
Helix 109	109	O	274	278	Right-handed 310
Helix 110	110	O	294	308	Right-handed alpha
Helix 111	111	O	312	316	Right-handed 310
Helix 112	112	O	323	341	Right-handed alpha
Helix 113	113	O	374	385	Right-handed alpha
Helix 114	114	O	390	402	Right-handed alpha
Helix 115	115	O	411	421	Right-handed alpha

There are 14 sheets in PDB entry 3HHZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	A	217	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	207	first strand
Strand 2	C	217	220	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	207	first strand
Strand 2	E	217	219	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	13	14	first strand
Strand 2	K	5	7	anti-parallel
Strand 3	M	348	349	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	40	42	first strand
Strand 2	K	109	111	parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	89	90	first strand
Strand 2	K	93	94	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	348	349	first strand
Strand 2	N	5	7	anti-parallel
Strand 3	N	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	12	14	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	348	349	first strand
Strand 2	O	5	7	anti-parallel
Strand 3	O	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	6	first strand
Strand 2	M	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	89	90	first strand
Strand 2	M	93	94	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	40	42	first strand
Strand 2	N	109	111	parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	89	90	first strand
Strand 2	N	93	94	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	88	90	first strand
Strand 2	O	93	96	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HHZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HHZ