Analysis of interatomic Contacts of Structural Units in PDB entry:
3HI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HI8 entry

There are 6 chains in PDB entry 3HI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 247
B	MET 1	ASP 247
C	MET 1	ASP 247
D	MET 1	ASP 247
E	MET 1	ASP 247
F	MET 1	ASP 247

There are 42 helices in PDB entry 3HI8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	17	Right-handed alpha
Helix 2	2	A	18	21	Right-handed 310
Helix 3	3	A	69	77	Right-handed alpha
Helix 4	4	A	78	80	Right-handed 310
Helix 5	5	A	112	116	Right-handed 310
Helix 6	6	A	135	146	Right-handed alpha
Helix 7	7	A	197	205	Right-handed alpha
Helix 8	8	B	8	17	Right-handed alpha
Helix 9	9	B	18	21	Right-handed 310
Helix 10	10	B	69	77	Right-handed alpha
Helix 11	11	B	78	80	Right-handed 310
Helix 12	12	B	112	116	Right-handed 310
Helix 13	13	B	135	146	Right-handed alpha
Helix 14	14	B	197	205	Right-handed alpha
Helix 15	15	C	8	17	Right-handed alpha
Helix 16	16	C	18	21	Right-handed 310
Helix 17	17	C	69	77	Right-handed alpha
Helix 18	18	C	78	80	Right-handed 310
Helix 19	19	C	112	116	Right-handed 310
Helix 20	20	C	135	146	Right-handed alpha
Helix 21	21	C	197	205	Right-handed alpha
Helix 22	22	D	8	17	Right-handed alpha
Helix 23	23	D	18	21	Right-handed 310
Helix 24	24	D	69	77	Right-handed alpha
Helix 25	25	D	78	80	Right-handed 310
Helix 26	26	D	112	116	Right-handed 310
Helix 27	27	D	135	146	Right-handed alpha
Helix 28	28	D	197	205	Right-handed alpha
Helix 29	29	E	8	17	Right-handed alpha
Helix 30	30	E	18	21	Right-handed 310
Helix 31	31	E	69	77	Right-handed alpha
Helix 32	32	E	78	80	Right-handed 310
Helix 33	33	E	112	116	Right-handed 310
Helix 34	34	E	135	146	Right-handed alpha
Helix 35	35	E	197	205	Right-handed alpha
Helix 36	36	F	8	17	Right-handed alpha
Helix 37	37	F	18	21	Right-handed 310
Helix 38	38	F	69	77	Right-handed alpha
Helix 39	39	F	78	80	Right-handed 310
Helix 40	40	F	112	116	Right-handed 310
Helix 41	41	F	135	146	Right-handed alpha
Helix 42	42	F	197	205	Right-handed alpha

There are 18 sheets in PDB entry 3HI8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	85	89	anti-parallel
Strand 3	A	97	101	anti-parallel
Strand 4	A	104	108	anti-parallel
Strand 5	C	172	178	anti-parallel
Strand 6	C	163	164	anti-parallel
Strand 7	C	155	156	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	25	29	anti-parallel
Strand 3	A	34	36	anti-parallel
Strand 4	A	46	50	anti-parallel
Strand 5	A	237	240	anti-parallel
Strand 6	A	223	226	anti-parallel
Strand 7	A	212	216	anti-parallel
Strand 8	A	131	134	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	194	196	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	163	164	anti-parallel
Strand 3	A	172	178	anti-parallel
Strand 4	B	104	108	anti-parallel
Strand 5	B	97	101	anti-parallel
Strand 6	B	85	89	anti-parallel
Strand 7	B	5	7	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	25	29	anti-parallel
Strand 3	B	34	36	anti-parallel
Strand 4	B	46	50	anti-parallel
Strand 5	B	237	240	anti-parallel
Strand 6	B	223	226	anti-parallel
Strand 7	B	212	216	anti-parallel
Strand 8	B	131	134	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	153	first strand
Strand 2	B	194	196	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	163	164	anti-parallel
Strand 3	B	172	178	anti-parallel
Strand 4	C	104	108	anti-parallel
Strand 5	C	97	101	anti-parallel
Strand 6	C	85	89	anti-parallel
Strand 7	C	5	7	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	25	29	anti-parallel
Strand 3	C	34	36	anti-parallel
Strand 4	C	46	50	anti-parallel
Strand 5	C	237	240	anti-parallel
Strand 6	C	223	226	anti-parallel
Strand 7	C	212	216	anti-parallel
Strand 8	C	131	134	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	194	196	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	85	89	anti-parallel
Strand 3	D	97	101	anti-parallel
Strand 4	D	104	108	anti-parallel
Strand 5	F	172	178	anti-parallel
Strand 6	F	163	164	anti-parallel
Strand 7	F	155	156	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	68	first strand
Strand 2	D	25	29	anti-parallel
Strand 3	D	34	36	anti-parallel
Strand 4	D	46	50	anti-parallel
Strand 5	D	237	240	anti-parallel
Strand 6	D	223	226	anti-parallel
Strand 7	D	212	216	anti-parallel
Strand 8	D	131	134	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	153	first strand
Strand 2	D	194	196	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	156	first strand
Strand 2	D	163	164	anti-parallel
Strand 3	D	172	178	anti-parallel
Strand 4	E	104	108	anti-parallel
Strand 5	E	97	101	anti-parallel
Strand 6	E	85	89	anti-parallel
Strand 7	E	5	7	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	68	first strand
Strand 2	E	25	29	anti-parallel
Strand 3	E	34	36	anti-parallel
Strand 4	E	46	50	anti-parallel
Strand 5	E	237	240	anti-parallel
Strand 6	E	223	226	anti-parallel
Strand 7	E	212	216	anti-parallel
Strand 8	E	131	134	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	153	first strand
Strand 2	E	194	196	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	156	first strand
Strand 2	E	163	164	anti-parallel
Strand 3	E	172	178	anti-parallel
Strand 4	F	104	108	anti-parallel
Strand 5	F	97	101	anti-parallel
Strand 6	F	85	89	anti-parallel
Strand 7	F	5	7	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	68	first strand
Strand 2	F	25	29	anti-parallel
Strand 3	F	34	36	anti-parallel
Strand 4	F	46	50	anti-parallel
Strand 5	F	237	240	anti-parallel
Strand 6	F	223	226	anti-parallel
Strand 7	F	212	216	anti-parallel
Strand 8	F	131	134	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	153	first strand
Strand 2	F	194	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HI8