Analysis of interatomic Contacts of Structural Units in PDB entry:
3HIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HIV entry

There are 2 chains in PDB entry 3HIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ASP 257
B
 VAL 1ASP 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3HIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 28Right-handed alpha
Helix 2
2
A
97 105Right-handed alpha
Helix 3
3
A
106 109Right-handed 310
Helix 4
4
A
110 112Right-handed 310
Helix 5
5
A
122 131Right-handed alpha
Helix 6
6
A
133 138Right-handed alpha
Helix 7
7
A
140 149Right-handed alpha
Helix 8
8
A
157 178Right-handed alpha
Helix 9
9
A
178 188Right-handed alpha
Helix 10
10
A
199 207Right-handed alpha
Helix 11
11
A
208 218Right-handed alpha
Helix 12
12
A
246 249Right-handed 310
Helix 13
13
B
12 28Right-handed alpha
Helix 14
14
B
97 105Right-handed alpha
Helix 15
15
B
106 109Right-handed 310
Helix 16
16
B
110 112Right-handed 310
Helix 17
17
B
122 131Right-handed alpha
Helix 18
18
B
133 138Right-handed alpha
Helix 19
19
B
140 149Right-handed alpha
Helix 20
20
B
157 172Right-handed alpha
Helix 21
21
B
172 178Right-handed alpha
Helix 22
22
B
178 188Right-handed alpha
Helix 23
23
B
199 207Right-handed alpha
Helix 24
24
B
208 218Right-handed alpha
Helix 25
25
B
246 249Right-handed 310
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There are 4 sheets in PDB entry 3HIV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
51 57parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
74 80anti-parallel
Strand 5
A
86 90anti-parallel
Strand 6
A
114 116parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 230first strand
Strand 2
A
240 244anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
51 58parallel
Strand 3
B
61 68anti-parallel
Strand 4
B
74 80anti-parallel
Strand 5
B
86 90anti-parallel
Strand 6
B
114 116parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 230first strand
Strand 2
B
240 244anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il