Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HJ3 entry

There are 4 chains in PDB entry 3HJ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	VAL 521
B	GLU 3	VAL 521
C	GLU 3	VAL 521
D	GLU 3	VAL 521

There are 74 helices in PDB entry 3HJ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	29	42	Right-handed alpha
Helix 2	2	A	56	60	Right-handed alpha
Helix 3	3	A	61	63	Right-handed 310
Helix 4	4	A	115	125	Right-handed alpha
Helix 5	5	A	193	208	Right-handed alpha
Helix 6	6	A	211	216	Right-handed alpha
Helix 7	7	A	220	224	Right-handed 310
Helix 8	8	A	236	251	Right-handed alpha
Helix 9	9	A	287	300	Right-handed alpha
Helix 10	10	A	305	311	Right-handed alpha
Helix 11	11	A	317	320	Right-handed 310
Helix 12	12	A	321	328	Right-handed alpha
Helix 13	13	A	341	349	Right-handed alpha
Helix 14	14	A	366	378	Right-handed alpha
Helix 15	15	A	393	397	Right-handed 310
Helix 16	16	A	429	450	Right-handed alpha
Helix 17	17	A	469	477	Right-handed alpha
Helix 18	18	A	495	499	Right-handed 310
Helix 19	19	A	500	502	Right-handed 310
Helix 20	20	B	29	42	Right-handed alpha
Helix 21	21	B	56	62	Right-handed alpha
Helix 22	22	B	93	98	Right-handed alpha
Helix 23	23	B	115	125	Right-handed alpha
Helix 24	24	B	193	208	Right-handed alpha
Helix 25	25	B	211	216	Right-handed alpha
Helix 26	26	B	220	224	Right-handed 310
Helix 27	27	B	236	251	Right-handed alpha
Helix 28	28	B	287	300	Right-handed alpha
Helix 29	29	B	304	311	Right-handed alpha
Helix 30	30	B	321	328	Right-handed alpha
Helix 31	31	B	341	349	Right-handed alpha
Helix 32	32	B	366	378	Right-handed alpha
Helix 33	33	B	390	394	Right-handed 310
Helix 34	34	B	429	450	Right-handed alpha
Helix 35	35	B	469	478	Right-handed alpha
Helix 36	36	B	495	499	Right-handed 310
Helix 37	37	B	500	502	Right-handed 310
Helix 38	38	C	29	41	Right-handed alpha
Helix 39	39	C	56	62	Right-handed alpha
Helix 40	40	C	94	98	Right-handed 310
Helix 41	41	C	115	120	Right-handed alpha
Helix 42	42	C	193	208	Right-handed alpha
Helix 43	43	C	209	215	Right-handed 310
Helix 44	44	C	220	224	Right-handed 310
Helix 45	45	C	236	251	Right-handed alpha
Helix 46	46	C	287	300	Right-handed alpha
Helix 47	47	C	305	311	Right-handed alpha
Helix 48	48	C	317	320	Right-handed 310
Helix 49	49	C	321	328	Right-handed alpha
Helix 50	50	C	341	349	Right-handed alpha
Helix 51	51	C	366	378	Right-handed alpha
Helix 52	52	C	393	397	Right-handed 310
Helix 53	53	C	429	450	Right-handed alpha
Helix 54	54	C	469	478	Right-handed alpha
Helix 55	55	C	495	499	Right-handed 310
Helix 56	56	C	500	502	Right-handed 310
Helix 57	57	D	29	40	Right-handed alpha
Helix 58	58	D	56	62	Right-handed alpha
Helix 59	59	D	93	98	Right-handed alpha
Helix 60	60	D	115	125	Right-handed alpha
Helix 61	61	D	193	208	Right-handed alpha
Helix 62	62	D	209	215	Right-handed 310
Helix 63	63	D	220	224	Right-handed 310
Helix 64	64	D	236	251	Right-handed alpha
Helix 65	65	D	287	301	Right-handed alpha
Helix 66	66	D	304	311	Right-handed alpha
Helix 67	67	D	321	328	Right-handed alpha
Helix 68	68	D	341	348	Right-handed alpha
Helix 69	69	D	366	378	Right-handed alpha
Helix 70	70	D	390	395	Right-handed alpha
Helix 71	71	D	429	449	Right-handed alpha
Helix 72	72	D	469	477	Right-handed alpha
Helix 73	73	D	495	499	Right-handed 310
Helix 74	74	D	500	502	Right-handed 310

There are 20 sheets in PDB entry 3HJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	71	75	parallel
Strand 3	A	49	55	parallel
Strand 4	A	107	114	parallel
Strand 5	A	6	13	parallel
Strand 6	A	130	136	parallel
Strand 7	A	173	177	anti-parallel
Strand 8	A	154	159	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	145	146	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	168	170	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	262	273	anti-parallel
Strand 3	A	452	466	anti-parallel
Strand 4	A	415	422	parallel
Strand 5	A	403	410	anti-parallel
Strand 6	A	385	387	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	489	first strand
Strand 2	A	504	507	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	70	75	parallel
Strand 3	B	49	55	parallel
Strand 4	B	107	114	parallel
Strand 5	B	6	13	parallel
Strand 6	B	130	137	parallel
Strand 7	B	168	177	anti-parallel
Strand 8	B	154	159	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	70	75	parallel
Strand 3	B	49	55	parallel
Strand 4	B	107	114	parallel
Strand 5	B	6	13	parallel
Strand 6	B	130	137	parallel
Strand 7	B	168	177	anti-parallel
Strand 8	B	163	165	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	145	146	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	262	273	anti-parallel
Strand 3	B	452	466	anti-parallel
Strand 4	B	415	426	parallel
Strand 5	B	403	410	anti-parallel
Strand 6	B	385	387	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	489	first strand
Strand 2	B	504	507	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	71	75	parallel
Strand 3	C	51	55	parallel
Strand 4	C	110	114	parallel
Strand 5	C	6	13	parallel
Strand 6	C	130	136	parallel
Strand 7	C	168	177	anti-parallel
Strand 8	C	154	156	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	71	75	parallel
Strand 3	C	51	55	parallel
Strand 4	C	110	114	parallel
Strand 5	C	6	13	parallel
Strand 6	C	130	136	parallel
Strand 7	C	168	177	anti-parallel
Strand 8	C	163	165	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	145	146	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	262	273	anti-parallel
Strand 3	C	452	466	anti-parallel
Strand 4	C	415	426	parallel
Strand 5	C	403	410	anti-parallel
Strand 6	C	385	387	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	489	first strand
Strand 2	C	504	507	anti-parallel

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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	71	75	parallel
Strand 3	D	49	55	parallel
Strand 4	D	107	114	parallel
Strand 5	D	5	10	parallel
Strand 6	D	130	133	parallel
Strand 7	D	173	176	anti-parallel
Strand 8	D	155	159	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	145	146	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	165	first strand
Strand 2	D	168	170	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	262	270	anti-parallel
Strand 3	D	452	466	anti-parallel
Strand 4	D	415	426	parallel
Strand 5	D	403	410	anti-parallel
Strand 6	D	385	387	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	489	first strand
Strand 2	D	504	507	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HJ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJ3