Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HJA entry

There are 4 chains in PDB entry 3HJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 334
B	MET 1	VAL 334
C	MET 1	VAL 334
D	MET 1	VAL 334

There are 50 helices in PDB entry 3HJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	22	Right-handed alpha
Helix 2	2	A	34	43	Right-handed alpha
Helix 3	3	A	76	80	Right-handed 310
Helix 4	4	A	81	86	Right-handed alpha
Helix 5	5	A	106	111	Right-handed 310
Helix 6	6	A	137	141	Right-handed 310
Helix 7	7	A	152	170	Right-handed alpha
Helix 8	8	A	216	221	Right-handed alpha
Helix 9	9	A	222	225	Right-handed 310
Helix 10	10	A	255	269	Right-handed alpha
Helix 11	11	A	284	289	Right-handed 310
Helix 12	12	A	300	302	Right-handed 310
Helix 13	13	A	319	334	Right-handed alpha
Helix 14	14	B	9	22	Right-handed alpha
Helix 15	15	B	34	43	Right-handed alpha
Helix 16	16	B	76	80	Right-handed 310
Helix 17	17	B	106	111	Right-handed 310
Helix 18	18	B	137	141	Right-handed 310
Helix 19	19	B	152	170	Right-handed alpha
Helix 20	20	B	216	221	Right-handed alpha
Helix 21	21	B	222	225	Right-handed 310
Helix 22	22	B	255	267	Right-handed alpha
Helix 23	23	B	284	289	Right-handed 310
Helix 24	24	B	300	302	Right-handed 310
Helix 25	25	B	319	334	Right-handed alpha
Helix 26	26	C	9	22	Right-handed alpha
Helix 27	27	C	34	43	Right-handed alpha
Helix 28	28	C	76	80	Right-handed 310
Helix 29	29	C	81	86	Right-handed alpha
Helix 30	30	C	108	113	Right-handed alpha
Helix 31	31	C	137	141	Right-handed 310
Helix 32	32	C	152	170	Right-handed alpha
Helix 33	33	C	216	221	Right-handed alpha
Helix 34	34	C	222	225	Right-handed 310
Helix 35	35	C	255	268	Right-handed alpha
Helix 36	36	C	284	289	Right-handed 310
Helix 37	37	C	300	302	Right-handed 310
Helix 38	38	C	319	334	Right-handed alpha
Helix 39	39	D	9	22	Right-handed alpha
Helix 40	40	D	34	43	Right-handed alpha
Helix 41	41	D	76	80	Right-handed 310
Helix 42	42	D	108	113	Right-handed alpha
Helix 43	43	D	137	141	Right-handed 310
Helix 44	44	D	152	170	Right-handed alpha
Helix 45	45	D	216	221	Right-handed alpha
Helix 46	46	D	222	225	Right-handed 310
Helix 47	47	D	255	268	Right-handed alpha
Helix 48	48	D	284	289	Right-handed 310
Helix 49	49	D	300	302	Right-handed 310
Helix 50	50	D	319	334	Right-handed alpha

There are 16 sheets in PDB entry 3HJA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	58	first strand
Strand 2	A	61	64	anti-parallel
Strand 3	A	67	72	anti-parallel
Strand 4	A	25	30	parallel
Strand 5	A	2	6	parallel
Strand 6	A	89	92	parallel
Strand 7	A	118	121	parallel
Strand 8	A	147	149	parallel
Strand 9	A	130	131	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	49	50	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	228	235	anti-parallel
Strand 3	A	171	181	parallel
Strand 4	A	241	249	anti-parallel
Strand 5	A	309	316	anti-parallel
Strand 6	A	295	298	anti-parallel
Strand 7	A	276	279	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	228	235	anti-parallel
Strand 3	A	171	181	parallel
Strand 4	A	241	249	anti-parallel
Strand 5	A	309	316	anti-parallel
Strand 6	A	303	304	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	58	first strand
Strand 2	B	61	64	anti-parallel
Strand 3	B	67	72	anti-parallel
Strand 4	B	25	30	parallel
Strand 5	B	2	6	parallel
Strand 6	B	89	92	parallel
Strand 7	B	118	121	parallel
Strand 8	B	147	149	parallel
Strand 9	B	130	131	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	49	50	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	228	235	anti-parallel
Strand 3	B	171	181	parallel
Strand 4	B	241	249	anti-parallel
Strand 5	B	309	316	anti-parallel
Strand 6	B	295	298	anti-parallel
Strand 7	B	276	279	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	228	235	anti-parallel
Strand 3	B	171	181	parallel
Strand 4	B	241	249	anti-parallel
Strand 5	B	309	316	anti-parallel
Strand 6	B	303	304	anti-parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	58	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	67	72	anti-parallel
Strand 4	C	25	30	parallel
Strand 5	C	2	6	parallel
Strand 6	C	89	92	parallel
Strand 7	C	118	121	parallel
Strand 8	C	147	149	parallel
Strand 9	C	130	131	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	49	50	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	210	first strand
Strand 2	C	228	235	anti-parallel
Strand 3	C	171	181	parallel
Strand 4	C	241	249	anti-parallel
Strand 5	C	309	316	anti-parallel
Strand 6	C	295	298	anti-parallel
Strand 7	C	276	279	parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	210	first strand
Strand 2	C	228	235	anti-parallel
Strand 3	C	171	181	parallel
Strand 4	C	241	249	anti-parallel
Strand 5	C	309	316	anti-parallel
Strand 6	C	303	304	anti-parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	58	first strand
Strand 2	D	61	64	anti-parallel
Strand 3	D	67	72	anti-parallel
Strand 4	D	25	30	parallel
Strand 5	D	2	6	parallel
Strand 6	D	89	92	parallel
Strand 7	D	118	121	parallel
Strand 8	D	147	149	parallel
Strand 9	D	130	131	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	49	50	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	210	first strand
Strand 2	D	228	235	anti-parallel
Strand 3	D	171	181	parallel
Strand 4	D	241	249	anti-parallel
Strand 5	D	309	316	anti-parallel
Strand 6	D	295	298	anti-parallel
Strand 7	D	276	279	parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	210	first strand
Strand 2	D	228	235	anti-parallel
Strand 3	D	171	181	parallel
Strand 4	D	241	249	anti-parallel
Strand 5	D	309	316	anti-parallel
Strand 6	D	303	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJA