Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HJC entry

There is 1 chain in PDB entry 3HJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1SER 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3HJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
8 12Right-handed 310
Helix 3
3
A
13 24Right-handed alpha
Helix 4
4
A
82 86Right-handed 310
Helix 5
5
A
87 91Right-handed 310
Helix 6
6
A
109 136Right-handed alpha
Helix 7
7
A
138 158Right-handed alpha
Helix 8
8
A
160 162Right-handed 310
Helix 9
9
A
163 171Right-handed alpha
Helix 10
10
A
184 191Right-handed alpha
Helix 11
11
A
206 212Right-handed alpha
Helix 12
12
A
213 215Right-handed 310
Helix 13
13
A
216 223Right-handed alpha
Helix 14
14
A
231 241Right-handed alpha
Helix 15
15
A
262 276Right-handed alpha
Helix 16
16
A
276 288Right-handed alpha
Helix 17
17
A
289 291Right-handed 310
Helix 18
18
A
315 325Right-handed alpha
Helix 19
19
A
348 360Right-handed alpha
Helix 20
20
A
364 383Right-handed alpha
Helix 21
21
A
388 405Right-handed alpha
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There are 3 sheets in PDB entry 3HJC. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
45 51anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
69 73parallel
Strand 5
A
76 79anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
198 203parallel
Strand 3
A
247 251parallel
Strand 4
A
243 244anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
341 344parallel
Strand 3
A
305 308anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il