Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HJE entry

There is 1 chain in PDB entry 3HJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 704
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 3HJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 19Right-handed alpha
Helix 2
2
A
20 28Right-handed alpha
Helix 3
3
A
58 60Right-handed 310
Helix 4
4
A
61 77Right-handed alpha
Helix 5
5
A
95 105Right-handed alpha
Helix 6
6
A
106 114Right-handed 310
Helix 7
7
A
156 160Right-handed 310
Helix 8
8
A
163 170Right-handed alpha
Helix 9
9
A
200 209Right-handed alpha
Helix 10
10
A
210 214Right-handed 310
Helix 11
11
A
223 227Right-handed 310
Helix 12
12
A
229 242Right-handed alpha
Helix 13
13
A
268 277Right-handed alpha
Helix 14
14
A
282 292Right-handed alpha
Helix 15
15
A
297 314Right-handed alpha
Helix 16
16
A
314 326Right-handed alpha
Helix 17
17
A
328 339Right-handed alpha
Helix 18
18
A
353 361Right-handed alpha
Helix 19
19
A
361 371Right-handed alpha
Helix 20
20
A
371 380Right-handed alpha
Helix 21
21
A
381 390Right-handed alpha
Helix 22
22
A
393 397Right-handed 310
Helix 23
23
A
401 405Right-handed 310
Helix 24
24
A
417 427Right-handed alpha
Helix 25
25
A
445 456Right-handed alpha
Helix 26
26
A
458 474Right-handed alpha
Helix 27
27
A
478 493Right-handed alpha
Helix 28
28
A
497 516Right-handed alpha
Helix 29
29
A
525 540Right-handed alpha
Helix 30
30
A
542 574Right-handed alpha
Helix 31
31
A
594 598Right-handed 310
Helix 32
32
A
610 614Right-handed 310
Helix 33
33
A
618 634Right-handed alpha
Helix 34
34
A
636 641Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3HJE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
245 248parallel
Strand 3
A
218 221parallel
Strand 4
A
79 84parallel
Strand 5
A
31 34parallel
Strand 6
A
5 9parallel
Strand 7
A
577 581parallel
Strand 8
A
434 435parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
50 56anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
186 187anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 128first strand
Strand 2
A
173 177parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
149 152anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 645first strand
Strand 2
A
652 657anti-parallel
Strand 3
A
661 666anti-parallel
Strand 4
A
700 703anti-parallel
Strand 5
A
672 682anti-parallel
Strand 6
A
687 695anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il