Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HJF entry

There are 3 chains in PDB entry 3HJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3VAL 685
X
 T 1 A 17
Y
 C 5 G 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3HJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 54Right-handed alpha
Helix 2
2
A
69 73Right-handed 310
Helix 3
3
A
102 123Right-handed alpha
Helix 4
4
A
178 184Right-handed alpha
Helix 5
5
A
222 230Right-handed alpha
Helix 6
6
A
282 301Right-handed alpha
Helix 7
7
A
329 331Right-handed 310
Helix 8
8
A
332 337Right-handed alpha
Helix 9
9
A
358 371Right-handed alpha
Helix 10
10
A
384 387Right-handed 310
Helix 11
11
A
388 401Right-handed alpha
Helix 12
12
A
414 428Right-handed alpha
Helix 13
13
A
443 459Right-handed alpha
Helix 14
14
A
515 532Right-handed alpha
Helix 15
15
A
554 564Right-handed alpha
Helix 16
16
A
627 639Right-handed alpha
Helix 17
17
A
653 670Right-handed alpha
Helix 18
18
A
673 677Right-handed 310
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There are 7 sheets in PDB entry 3HJF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
133 140anti-parallel
Strand 3
A
145 157anti-parallel
Strand 4
A
163 175anti-parallel
Strand 5
A
6 16anti-parallel
Strand 6
A
307 315anti-parallel
Strand 7
A
592 595anti-parallel
Strand 8
A
600 604anti-parallel
Strand 9
A
617 624anti-parallel
Strand 10
A
567 574anti-parallel
Strand 11
A
540 546parallel
Strand 12
A
473 480parallel
Strand 13
A
486 494anti-parallel
Strand 14
A
507 509anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 503first strand
Strand 2
A
486 494anti-parallel
Strand 3
A
473 480anti-parallel
Strand 4
A
540 546parallel
Strand 5
A
567 574parallel
Strand 6
A
617 624anti-parallel
Strand 7
A
600 604anti-parallel
Strand 8
A
592 595anti-parallel
Strand 9
A
307 315anti-parallel
Strand 10
A
6 16anti-parallel
Strand 11
A
581 583anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
27 30anti-parallel
Strand 4
A
91 95anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
85 89anti-parallel
Strand 3
A
76 80anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
262 263anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
320 322anti-parallel
Strand 3
A
464 466anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
344 350parallel
Strand 3
A
403 410parallel
Strand 4
A
432 436parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il