Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HJG entry

There are 2 chains in PDB entry 3HJG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLU 203
B
 LYS 2GLU 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3HJG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 43Right-handed alpha
Helix 2
2
A
55 70Right-handed alpha
Helix 3
3
A
77 80Right-handed 310
Helix 4
4
A
93 98Right-handed alpha
Helix 5
5
A
102 108Right-handed alpha
Helix 6
6
A
109 112Right-handed 310
Helix 7
7
A
119 138Right-handed alpha
Helix 8
8
A
147 159Right-handed alpha
Helix 9
9
A
166 172Right-handed alpha
Helix 10
10
B
20 22Right-handed 310
Helix 11
11
B
29 43Right-handed alpha
Helix 12
12
B
55 69Right-handed alpha
Helix 13
13
B
119 138Right-handed alpha
Helix 14
14
B
147 159Right-handed alpha
Helix 15
15
B
166 171Right-handed alpha
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There are 5 sheets in PDB entry 3HJG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
50 52parallel
Strand 3
A
142 146parallel
Strand 4
A
3 10parallel
Strand 5
A
178 186anti-parallel
Strand 6
A
190 194anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
50 52parallel
Strand 3
A
142 146parallel
Strand 4
A
3 10parallel
Strand 5
A
178 186anti-parallel
Strand 6
A
199 200anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
49 52parallel
Strand 3
B
142 146parallel
Strand 4
B
3 10parallel
Strand 5
B
178 186anti-parallel
Strand 6
B
190 194anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
49 52parallel
Strand 3
B
142 146parallel
Strand 4
B
3 10parallel
Strand 5
B
178 186anti-parallel
Strand 6
B
199 200anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
24 28anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il