Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HJH entry

There is 1 chain in PDB entry 3HJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 5LEU 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3HJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 38Right-handed alpha
Helix 2
2
A
48 62Right-handed alpha
Helix 3
3
A
84 98Right-handed alpha
Helix 4
4
A
99 101Right-handed 310
Helix 5
5
A
110 115Right-handed alpha
Helix 6
6
A
119 126Right-handed alpha
Helix 7
7
A
137 148Right-handed alpha
Helix 8
8
A
220 235Right-handed alpha
Helix 9
9
A
243 250Right-handed alpha
Helix 10
10
A
256 265Right-handed 310
Helix 11
11
A
271 276Right-handed 310
Helix 12
12
A
287 307Right-handed alpha
Helix 13
13
A
316 320Right-handed 310
Helix 14
14
A
323 332Right-handed alpha
Helix 15
15
A
371 381Right-handed alpha
Helix 16
16
A
398 403Right-handed alpha
Helix 17
17
A
404 406Right-handed 310
Helix 18
18
A
414 418Right-handed 310
Helix 19
19
A
446 450Right-handed alpha
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There are 4 sheets in PDB entry 3HJH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
105 109parallel
Strand 3
A
42 46parallel
Strand 4
A
281 284parallel
Strand 5
A
336 339parallel
Strand 6
A
16 20parallel
Strand 7
A
350 352parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
208 211anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
161 165parallel
Strand 3
A
168 171anti-parallel
Strand 4
A
180 185anti-parallel
Strand 5
A
188 196anti-parallel
Strand 6
A
201 206anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 356first strand
Strand 2
A
434 436anti-parallel
Strand 3
A
441 445anti-parallel
Strand 4
A
385 389parallel
Strand 5
A
423 427parallel
Strand 6
A
410 411parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il