Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HJJ entry

There are 3 chains in PDB entry 3HJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1GLU 187
B
 MSE 1GLU 187
C
 MSE 1GLU 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3HJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 10Right-handed alpha
Helix 2
2
A
18 42Right-handed alpha
Helix 3
3
A
45 54Right-handed alpha
Helix 4
4
A
118 123Right-handed alpha
Helix 5
5
B
3 11Right-handed alpha
Helix 6
6
B
18 42Right-handed alpha
Helix 7
7
B
45 54Right-handed alpha
Helix 8
8
B
118 123Right-handed alpha
Helix 9
9
C
3 10Right-handed alpha
Helix 10
10
C
18 42Right-handed alpha
Helix 11
11
C
45 54Right-handed alpha
Helix 12
12
C
118 123Right-handed alpha
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There are 12 sheets in PDB entry 3HJJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
113 114anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
76 78parallel
Strand 3
A
96 98parallel
Strand 4
A
132 134parallel
Strand 5
A
151 152parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
83 84parallel
Strand 3
A
103 104parallel
Strand 4
A
139 140parallel
Strand 5
A
157 158parallel
Strand 6
A
172 175parallel
Strand 7
A
180 184anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
89 91parallel
Strand 3
A
109 111parallel
Strand 4
A
145 146parallel
Strand 5
A
163 164parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
126 129anti-parallel
Strand 3
B
113 114anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
76 78parallel
Strand 3
B
96 98parallel
Strand 4
B
132 134parallel
Strand 5
B
151 152parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
83 84parallel
Strand 3
B
103 104parallel
Strand 4
B
139 140parallel
Strand 5
B
157 158parallel
Strand 6
B
172 175parallel
Strand 7
B
180 184anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
89 91parallel
Strand 3
B
109 111parallel
Strand 4
B
145 146parallel
Strand 5
B
163 164parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 15first strand
Strand 2
C
126 129anti-parallel
Strand 3
C
113 114anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 57first strand
Strand 2
C
76 78parallel
Strand 3
C
96 98parallel
Strand 4
C
132 134parallel
Strand 5
C
151 152parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
83 84parallel
Strand 3
C
103 104parallel
Strand 4
C
139 140parallel
Strand 5
C
157 158parallel
Strand 6
C
172 175parallel
Strand 7
C
180 184anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 70first strand
Strand 2
C
89 91parallel
Strand 3
C
109 111parallel
Strand 4
C
145 146parallel
Strand 5
C
163 164parallel
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