Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HJV entry

There are 2 chains in PDB entry 3HJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 6LYS 312
B
 SER 7LYS 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3HJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 31Right-handed alpha
Helix 2
2
A
32 46Right-handed alpha
Helix 3
3
A
48 56Right-handed alpha
Helix 4
4
A
57 62Right-handed alpha
Helix 5
5
A
63 85Right-handed alpha
Helix 6
6
A
97 107Right-handed alpha
Helix 7
7
A
111 129Right-handed alpha
Helix 8
8
A
144 157Right-handed alpha
Helix 9
9
A
178 191Right-handed alpha
Helix 10
10
A
207 209Right-handed 310
Helix 11
11
A
210 222Right-handed alpha
Helix 12
12
A
244 256Right-handed alpha
Helix 13
13
A
262 272Right-handed alpha
Helix 14
14
A
284 294Right-handed alpha
Helix 15
15
A
305 312Right-handed 310
Helix 16
16
B
24 31Right-handed alpha
Helix 17
17
B
32 46Right-handed alpha
Helix 18
18
B
48 56Right-handed alpha
Helix 19
19
B
57 62Right-handed alpha
Helix 20
20
B
63 85Right-handed alpha
Helix 21
21
B
97 107Right-handed alpha
Helix 22
22
B
111 128Right-handed alpha
Helix 23
23
B
144 157Right-handed alpha
Helix 24
24
B
178 191Right-handed alpha
Helix 25
25
B
207 209Right-handed 310
Helix 26
26
B
210 222Right-handed alpha
Helix 27
27
B
244 258Right-handed alpha
Helix 28
28
B
261 272Right-handed alpha
Helix 29
29
B
284 294Right-handed alpha
Helix 30
30
B
304 312Right-handed alpha
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There are 4 sheets in PDB entry 3HJV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
9 13parallel
Strand 3
A
276 280parallel
Strand 4
A
298 302parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
135 141anti-parallel
Strand 3
A
171 177anti-parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
260 261parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
9 13parallel
Strand 3
B
276 280parallel
Strand 4
B
298 302parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 168first strand
Strand 2
B
171 177anti-parallel
Strand 3
B
135 141anti-parallel
Strand 4
B
195 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il