Analysis of interatomic Contacts of Structural Units in PDB entry:
3HJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HJY entry

There are 5 chains in PDB entry 3HJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 11TRP 337
B
 PHE 3ILE 55
C
 G 1 C 21
D
 G 1 U 25
E
 G 4 U 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3HJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 49Right-handed alpha
Helix 2
2
A
61 73Right-handed alpha
Helix 3
3
A
98 101Right-handed 310
Helix 4
4
A
102 107Right-handed alpha
Helix 5
5
A
124 133Right-handed alpha
Helix 6
6
A
182 194Right-handed alpha
Helix 7
7
A
220 232Right-handed alpha
Helix 8
8
A
236 242Right-handed alpha
Helix 9
9
A
247 250Right-handed 310
Helix 10
10
A
259 268Right-handed alpha
Helix 11
11
A
308 315Right-handed alpha
Helix 12
12
B
41 54Right-handed alpha
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There are 4 sheets in PDB entry 3HJY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
277 281anti-parallel
Strand 3
A
255 258anti-parallel
Strand 4
A
289 293parallel
Strand 5
A
299 305anti-parallel
Strand 6
A
319 326anti-parallel
Strand 7
A
272 273anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
89 96anti-parallel
Strand 3
A
50 56anti-parallel
Strand 4
A
218 219parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
155 167anti-parallel
Strand 3
A
170 177anti-parallel
Strand 4
A
111 119anti-parallel
Strand 5
A
198 208anti-parallel
Strand 6
A
89 96parallel
Strand 7
A
50 56anti-parallel
Strand 8
A
243 245anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
28 29anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il