Analysis of interatomic Contacts of Structural Units in PDB entry:
3HK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HK5 entry

There are 2 chains in PDB entry 3HK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ARG 414
B
 SER 5ARG 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3HK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 20Right-handed alpha
Helix 2
2
A
31 35Right-handed 310
Helix 3
3
A
41 47Right-handed alpha
Helix 4
4
A
48 56Right-handed alpha
Helix 5
5
A
62 69Right-handed alpha
Helix 6
6
A
70 84Right-handed alpha
Helix 7
7
A
90 103Right-handed alpha
Helix 8
8
A
111 121Right-handed alpha
Helix 9
9
A
123 136Right-handed alpha
Helix 10
10
A
148 157Right-handed alpha
Helix 11
11
A
171 177Right-handed alpha
Helix 12
12
A
177 188Right-handed alpha
Helix 13
13
A
197 216Right-handed alpha
Helix 14
14
A
234 243Right-handed alpha
Helix 15
15
A
243 251Right-handed alpha
Helix 16
16
A
266 273Right-handed 310
Helix 17
17
A
281 291Right-handed alpha
Helix 18
18
A
302 304Right-handed 310
Helix 19
19
A
305 316Right-handed alpha
Helix 20
20
A
325 329Right-handed 310
Helix 21
21
A
330 346Right-handed alpha
Helix 22
22
A
360 387Right-handed alpha
Helix 23
23
A
392 405Right-handed alpha
Helix 24
24
A
405 413Right-handed alpha
Helix 25
25
B
5 20Right-handed alpha
Helix 26
26
B
31 35Right-handed 310
Helix 27
27
B
41 47Right-handed alpha
Helix 28
28
B
48 56Right-handed alpha
Helix 29
29
B
62 69Right-handed alpha
Helix 30
30
B
70 83Right-handed alpha
Helix 31
31
B
90 103Right-handed alpha
Helix 32
32
B
111 121Right-handed alpha
Helix 33
33
B
123 136Right-handed alpha
Helix 34
34
B
148 157Right-handed alpha
Helix 35
35
B
171 177Right-handed alpha
Helix 36
36
B
177 188Right-handed alpha
Helix 37
37
B
197 216Right-handed alpha
Helix 38
38
B
234 243Right-handed alpha
Helix 39
39
B
243 251Right-handed alpha
Helix 40
40
B
266 273Right-handed 310
Helix 41
41
B
281 291Right-handed alpha
Helix 42
42
B
302 304Right-handed 310
Helix 43
43
B
305 316Right-handed alpha
Helix 44
44
B
325 329Right-handed 310
Helix 45
45
B
330 346Right-handed alpha
Helix 46
46
B
360 386Right-handed alpha
Helix 47
47
B
392 405Right-handed alpha
Helix 48
48
B
405 413Right-handed alpha
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There are 6 sheets in PDB entry 3HK5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
137 141parallel
Strand 3
A
165 166parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
220 224parallel
Strand 3
A
255 259parallel
Strand 4
A
296 300parallel
Strand 5
A
319 321parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
275 276anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
137 141parallel
Strand 3
B
165 166parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
220 224parallel
Strand 3
B
255 259parallel
Strand 4
B
296 300parallel
Strand 5
B
319 321parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
275 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il