Analysis of interatomic Contacts of Structural Units in PDB entry:
3HKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HKF entry

There is 1 chain in PDB entry 3HKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 241SER 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 3HKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
249 255Right-handed alpha
Helix 2
2
A
312 318Right-handed alpha
Helix 3
3
A
357 361Right-handed 310
Helix 4
4
A
417 421Right-handed 310
Helix 5
5
A
435 437Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 3HKF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
261 269anti-parallel
Strand 3
A
303 310anti-parallel
Strand 4
A
291 292anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
261 269anti-parallel
Strand 3
A
303 310anti-parallel
Strand 4
A
296 297anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
280 282anti-parallel
Strand 3
A
322 326anti-parallel
Strand 4
A
335 339anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
366 375anti-parallel
Strand 3
A
407 415anti-parallel
Strand 4
A
394 396anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
366 375anti-parallel
Strand 3
A
407 415anti-parallel
Strand 4
A
400 401anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 386first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
439 444anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il