Analysis of interatomic Contacts of Structural Units in PDB entry:
3HKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HKO entry

There is 1 chain in PDB entry 3HKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -4SER 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3HKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 9Right-handed alpha
Helix 2
2
A
43 48Right-handed alpha
Helix 3
3
A
52 67Right-handed alpha
Helix 4
4
A
96 100Right-handed alpha
Helix 5
5
A
124 134Right-handed alpha
Helix 6
6
A
144 169Right-handed alpha
Helix 7
7
A
177 179Right-handed 310
Helix 8
8
A
203 205Right-handed 310
Helix 9
9
A
219 223Right-handed 310
Helix 10
10
A
224 229Right-handed alpha
Helix 11
11
A
237 254Right-handed alpha
Helix 12
12
A
262 273Right-handed alpha
Helix 13
13
A
279 285Right-handed 310
Helix 14
14
A
286 297Right-handed alpha
Helix 15
15
A
306 313Right-handed alpha
Helix 16
16
A
313 318Right-handed alpha
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There are 4 sheets in PDB entry 3HKO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 18first strand
Strand 2
A
23 29anti-parallel
Strand 3
A
35 42anti-parallel
Strand 4
A
84 90anti-parallel
Strand 5
A
75 80anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
112 117anti-parallel
Strand 3
A
140 142anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
200 201anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
191 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il