Analysis of interatomic Contacts of Structural Units in PDB entry:
3HL9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HL9 entry

There are 4 chains in PDB entry 3HL9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 10	GLY 413
B	ALA 10	GLY 413
C	ALA 10	GLY 413
D	ALA 10	GLY 413

There are 76 helices in PDB entry 3HL9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	27	Right-handed alpha
Helix 2	2	A	75	77	Right-handed 310
Helix 3	3	A	78	92	Right-handed alpha
Helix 4	4	A	100	104	Right-handed 310
Helix 5	5	A	105	111	Right-handed alpha
Helix 6	6	A	133	139	Right-handed alpha
Helix 7	7	A	146	149	Right-handed 310
Helix 8	8	A	150	160	Right-handed alpha
Helix 9	9	A	162	169	Right-handed 310
Helix 10	10	A	171	175	Right-handed 310
Helix 11	11	A	192	203	Right-handed alpha
Helix 12	12	A	206	215	Right-handed alpha
Helix 13	13	A	216	220	Right-handed 310
Helix 14	14	A	227	230	Right-handed 310
Helix 15	15	A	231	236	Right-handed alpha
Helix 16	16	A	275	288	Right-handed alpha
Helix 17	17	A	295	303	Right-handed alpha
Helix 18	18	A	308	322	Right-handed alpha
Helix 19	19	A	392	413	Right-handed alpha
Helix 20	20	B	11	27	Right-handed alpha
Helix 21	21	B	75	77	Right-handed 310
Helix 22	22	B	78	92	Right-handed alpha
Helix 23	23	B	100	104	Right-handed 310
Helix 24	24	B	105	111	Right-handed alpha
Helix 25	25	B	133	139	Right-handed alpha
Helix 26	26	B	146	149	Right-handed 310
Helix 27	27	B	150	160	Right-handed alpha
Helix 28	28	B	162	169	Right-handed 310
Helix 29	29	B	171	175	Right-handed 310
Helix 30	30	B	192	203	Right-handed alpha
Helix 31	31	B	206	215	Right-handed alpha
Helix 32	32	B	216	220	Right-handed 310
Helix 33	33	B	227	230	Right-handed 310
Helix 34	34	B	231	236	Right-handed alpha
Helix 35	35	B	275	288	Right-handed alpha
Helix 36	36	B	295	303	Right-handed alpha
Helix 37	37	B	308	322	Right-handed alpha
Helix 38	38	B	392	412	Right-handed alpha
Helix 39	39	C	11	27	Right-handed alpha
Helix 40	40	C	75	77	Right-handed 310
Helix 41	41	C	78	92	Right-handed alpha
Helix 42	42	C	100	104	Right-handed 310
Helix 43	43	C	105	111	Right-handed alpha
Helix 44	44	C	133	139	Right-handed alpha
Helix 45	45	C	146	149	Right-handed 310
Helix 46	46	C	150	160	Right-handed alpha
Helix 47	47	C	162	169	Right-handed 310
Helix 48	48	C	171	175	Right-handed 310
Helix 49	49	C	192	203	Right-handed alpha
Helix 50	50	C	206	215	Right-handed alpha
Helix 51	51	C	216	220	Right-handed 310
Helix 52	52	C	227	230	Right-handed 310
Helix 53	53	C	231	236	Right-handed alpha
Helix 54	54	C	275	288	Right-handed alpha
Helix 55	55	C	295	303	Right-handed alpha
Helix 56	56	C	308	322	Right-handed alpha
Helix 57	57	C	392	413	Right-handed alpha
Helix 58	58	D	11	27	Right-handed alpha
Helix 59	59	D	75	77	Right-handed 310
Helix 60	60	D	78	92	Right-handed alpha
Helix 61	61	D	100	104	Right-handed 310
Helix 62	62	D	105	111	Right-handed alpha
Helix 63	63	D	133	139	Right-handed alpha
Helix 64	64	D	146	149	Right-handed 310
Helix 65	65	D	150	160	Right-handed alpha
Helix 66	66	D	162	169	Right-handed 310
Helix 67	67	D	171	175	Right-handed 310
Helix 68	68	D	192	203	Right-handed alpha
Helix 69	69	D	206	215	Right-handed alpha
Helix 70	70	D	216	220	Right-handed 310
Helix 71	71	D	227	230	Right-handed 310
Helix 72	72	D	231	236	Right-handed alpha
Helix 73	73	D	275	288	Right-handed alpha
Helix 74	74	D	295	303	Right-handed alpha
Helix 75	75	D	308	322	Right-handed alpha
Helix 76	76	D	392	412	Right-handed alpha

There are 16 sheets in PDB entry 3HL9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	51	first strand
Strand 2	A	32	39	anti-parallel
Strand 3	A	379	384	anti-parallel
Strand 4	A	369	374	anti-parallel
Strand 5	A	361	365	anti-parallel
Strand 6	A	344	346	anti-parallel
Strand 7	A	337	339	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	273	274	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	117	first strand
Strand 2	A	123	126	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	242	244	anti-parallel
Strand 3	A	387	388	parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	32	39	anti-parallel
Strand 3	B	379	384	anti-parallel
Strand 4	B	369	374	anti-parallel
Strand 5	B	361	365	anti-parallel
Strand 6	B	344	346	anti-parallel
Strand 7	B	337	339	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	273	274	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	123	126	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	242	244	anti-parallel
Strand 3	B	387	388	parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	51	first strand
Strand 2	C	32	39	anti-parallel
Strand 3	C	379	384	anti-parallel
Strand 4	C	369	374	anti-parallel
Strand 5	C	361	365	anti-parallel
Strand 6	C	344	346	anti-parallel
Strand 7	C	337	339	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	C	273	274	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	117	first strand
Strand 2	C	123	126	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	253	first strand
Strand 2	C	242	244	anti-parallel
Strand 3	C	387	388	parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	51	first strand
Strand 2	D	32	39	anti-parallel
Strand 3	D	379	384	anti-parallel
Strand 4	D	369	374	anti-parallel
Strand 5	D	361	365	anti-parallel
Strand 6	D	344	346	anti-parallel
Strand 7	D	337	339	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	73	first strand
Strand 2	D	273	274	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	117	first strand
Strand 2	D	123	126	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	253	first strand
Strand 2	D	242	244	anti-parallel
Strand 3	D	387	388	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HL9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HL9