Analysis of interatomic Contacts of Structural Units in PDB entry:
3HLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HLD entry

There is 1 chain in PDB entry 3HLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -11GLN 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3HLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 8Right-handed alpha
Helix 2
2
A
12 27Right-handed alpha
Helix 3
3
A
77 92Right-handed alpha
Helix 4
4
A
105 110Right-handed alpha
Helix 5
5
A
133 139Right-handed alpha
Helix 6
6
A
150 160Right-handed alpha
Helix 7
7
A
190 204Right-handed alpha
Helix 8
8
A
206 215Right-handed alpha
Helix 9
9
A
216 220Right-handed 310
Helix 10
10
A
227 230Right-handed 310
Helix 11
11
A
231 238Right-handed alpha
Helix 12
12
A
256 261Right-handed alpha
Helix 13
13
A
275 289Right-handed alpha
Helix 14
14
A
295 303Right-handed alpha
Helix 15
15
A
308 321Right-handed alpha
Helix 16
16
A
392 411Right-handed alpha
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There are 5 sheets in PDB entry 3HLD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 51first strand
Strand 2
A
32 39anti-parallel
Strand 3
A
379 384anti-parallel
Strand 4
A
369 374anti-parallel
Strand 5
A
361 365anti-parallel
Strand 6
A
344 346anti-parallel
Strand 7
A
337 339anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
273 274anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
123 126anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
170 171anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
241 244anti-parallel
Strand 3
A
387 388parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il