Analysis of interatomic Contacts of Structural Units in PDB entry:
3HM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HM6 entry

There are 2 chains in PDB entry 3HM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 ILE 1563GLU 2129
C
 UNK 1007UNK 1033
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3HM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
1567 1577Right-handed alpha
Helix 2
2
X
1592 1594Right-handed 310
Helix 3
3
X
1595 1611Right-handed alpha
Helix 4
4
X
1612 1626Right-handed alpha
Helix 5
5
X
1630 1645Right-handed alpha
Helix 6
6
X
1648 1669Right-handed alpha
Helix 7
7
X
1670 1675Right-handed 310
Helix 8
8
X
1681 1702Right-handed alpha
Helix 9
9
X
1703 1720Right-handed alpha
Helix 10
10
X
1776 1789Right-handed alpha
Helix 11
11
X
1793 1797Right-handed 310
Helix 12
12
X
1799 1801Right-handed 310
Helix 13
13
X
1915 1942Right-handed alpha
Helix 14
14
X
1948 1965Right-handed alpha
Helix 15
15
X
1969 1981Right-handed alpha
Helix 16
16
X
1985 1992Right-handed alpha
Helix 17
17
X
1993 1996Right-handed 310
Helix 18
18
X
2002 2021Right-handed alpha
Helix 19
19
X
2032 2038Right-handed alpha
Helix 20
20
X
2041 2059Right-handed alpha
Helix 21
21
X
2063 2077Right-handed alpha
Helix 22
22
X
2083 2098Right-handed alpha
Helix 23
23
X
2098 2108Right-handed alpha
Helix 24
24
X
2109 2115Right-handed alpha
Helix 25
25
X
2116 2129Right-handed alpha
Helix 26
26
C
1007 1032Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3HM6. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
1767 1772first strand
Strand 2
X
1748 1754anti-parallel
Strand 3
X
1846 1851parallel
Strand 4
X
1803 1808anti-parallel
Strand 5
X
1814 1817anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
1826 1827first strand
Strand 2
X
1830 1832anti-parallel
Strand 3
X
1882 1884parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il