Analysis of interatomic Contacts of Structural Units in PDB entry:
3HM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HM8 entry

There are 4 chains in PDB entry 3HM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 479GLN 919
B
 SER 479GLN 919
C
 ARG 480GLN 919
D
 SER 479GLY 558
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 3HM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
479 488Right-handed alpha
Helix 2
2
A
489 491Right-handed 310
Helix 3
3
A
493 514Right-handed alpha
Helix 4
4
A
569 574Right-handed alpha
Helix 5
5
A
576 596Right-handed alpha
Helix 6
6
A
638 650Right-handed alpha
Helix 7
7
A
662 673Right-handed alpha
Helix 8
8
A
697 699Right-handed 310
Helix 9
9
A
714 718Right-handed 310
Helix 10
10
A
729 738Right-handed alpha
Helix 11
11
A
747 751Right-handed 310
Helix 12
12
A
752 770Right-handed alpha
Helix 13
13
A
773 777Right-handed 310
Helix 14
14
A
779 784Right-handed 310
Helix 15
15
A
789 797Right-handed alpha
Helix 16
16
A
802 812Right-handed alpha
Helix 17
17
A
818 855Right-handed alpha
Helix 18
18
A
868 874Right-handed alpha
Helix 19
19
A
876 889Right-handed alpha
Helix 20
20
A
902 919Right-handed alpha
Helix 21
21
B
479 488Right-handed alpha
Helix 22
22
B
489 491Right-handed 310
Helix 23
23
B
493 514Right-handed alpha
Helix 24
24
B
569 574Right-handed alpha
Helix 25
25
B
576 596Right-handed alpha
Helix 26
26
B
638 651Right-handed alpha
Helix 27
27
B
662 673Right-handed alpha
Helix 28
28
B
697 699Right-handed 310
Helix 29
29
B
714 718Right-handed 310
Helix 30
30
B
729 738Right-handed alpha
Helix 31
31
B
747 751Right-handed 310
Helix 32
32
B
752 770Right-handed alpha
Helix 33
33
B
779 784Right-handed 310
Helix 34
34
B
789 797Right-handed alpha
Helix 35
35
B
802 813Right-handed alpha
Helix 36
36
B
818 855Right-handed alpha
Helix 37
37
B
868 874Right-handed alpha
Helix 38
38
B
876 889Right-handed alpha
Helix 39
39
B
902 919Right-handed alpha
Helix 40
40
C
480 488Right-handed alpha
Helix 41
41
C
489 491Right-handed 310
Helix 42
42
C
493 514Right-handed alpha
Helix 43
43
C
569 574Right-handed alpha
Helix 44
44
C
576 596Right-handed alpha
Helix 45
45
C
638 651Right-handed alpha
Helix 46
46
C
662 673Right-handed alpha
Helix 47
47
C
697 699Right-handed 310
Helix 48
48
C
714 718Right-handed 310
Helix 49
49
C
729 738Right-handed alpha
Helix 50
50
C
747 751Right-handed 310
Helix 51
51
C
752 770Right-handed alpha
Helix 52
52
C
779 784Right-handed 310
Helix 53
53
C
789 797Right-handed alpha
Helix 54
54
C
802 812Right-handed alpha
Helix 55
55
C
818 855Right-handed alpha
Helix 56
56
C
868 874Right-handed alpha
Helix 57
57
C
876 889Right-handed alpha
Helix 58
58
C
902 919Right-handed alpha
Helix 59
59
D
479 488Right-handed alpha
Helix 60
60
D
489 491Right-handed 310
Helix 61
61
D
493 514Right-handed alpha
Helix 62
62
D
569 574Right-handed alpha
Helix 63
63
D
576 596Right-handed alpha
Helix 64
64
D
638 651Right-handed alpha
Helix 65
65
D
662 673Right-handed alpha
Helix 66
66
D
697 699Right-handed 310
Helix 67
67
D
714 718Right-handed 310
Helix 68
68
D
729 738Right-handed alpha
Helix 69
69
D
747 751Right-handed 310
Helix 70
70
D
752 770Right-handed alpha
Helix 71
71
D
779 784Right-handed 310
Helix 72
72
D
789 797Right-handed alpha
Helix 73
73
D
802 812Right-handed alpha
Helix 74
74
D
818 855Right-handed alpha
Helix 75
75
D
868 874Right-handed alpha
Helix 76
76
D
876 889Right-handed alpha
Helix 77
77
D
902 919Right-handed alpha
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There are 12 sheets in PDB entry 3HM8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 523first strand
Strand 2
A
708 712anti-parallel
Strand 3
A
688 695anti-parallel
Strand 4
A
678 684anti-parallel
Strand 5
A
860 867parallel
Strand 6
A
892 898parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 566first strand
Strand 2
A
548 555anti-parallel
Strand 3
A
536 543anti-parallel
Strand 4
A
604 608parallel
Strand 5
A
658 661parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 613first strand
Strand 2
A
621 622anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
522 523first strand
Strand 2
B
708 712anti-parallel
Strand 3
B
688 695anti-parallel
Strand 4
B
678 684anti-parallel
Strand 5
B
860 867parallel
Strand 6
B
892 898parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
559 566first strand
Strand 2
B
548 555anti-parallel
Strand 3
B
536 543anti-parallel
Strand 4
B
604 608parallel
Strand 5
B
658 661parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
612 616first strand
Strand 2
B
619 622anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
522 523first strand
Strand 2
C
708 712anti-parallel
Strand 3
C
688 695anti-parallel
Strand 4
C
678 684anti-parallel
Strand 5
C
860 867parallel
Strand 6
C
892 898parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
559 566first strand
Strand 2
C
548 555anti-parallel
Strand 3
C
536 543anti-parallel
Strand 4
C
604 608parallel
Strand 5
C
658 661parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
612 613first strand
Strand 2
C
621 622anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
522 523first strand
Strand 2
D
708 712anti-parallel
Strand 3
D
688 695anti-parallel
Strand 4
D
678 684anti-parallel
Strand 5
D
860 867parallel
Strand 6
D
892 898parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
559 566first strand
Strand 2
D
548 555anti-parallel
Strand 3
D
536 543anti-parallel
Strand 4
D
604 608parallel
Strand 5
D
658 661parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
612 616first strand
Strand 2
D
619 622anti-parallel
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