Analysis of interatomic Contacts of Structural Units in PDB entry:
3HM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HM9 entry

There are 3 chains in PDB entry 3HM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3VAL 685
X
 T 1 T 16
Y
 A 6 C 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3HM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed 310
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
102 122Right-handed alpha
Helix 4
4
A
282 301Right-handed alpha
Helix 5
5
A
329 331Right-handed 310
Helix 6
6
A
332 337Right-handed alpha
Helix 7
7
A
358 372Right-handed alpha
Helix 8
8
A
384 387Right-handed 310
Helix 9
9
A
388 401Right-handed alpha
Helix 10
10
A
414 427Right-handed alpha
Helix 11
11
A
443 459Right-handed alpha
Helix 12
12
A
515 535Right-handed alpha
Helix 13
13
A
554 564Right-handed alpha
Helix 14
14
A
627 640Right-handed alpha
Helix 15
15
A
653 670Right-handed alpha
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There are 7 sheets in PDB entry 3HM9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
151 157anti-parallel
Strand 4
A
162 168anti-parallel
Strand 5
A
5 18anti-parallel
Strand 6
A
307 315anti-parallel
Strand 7
A
592 595anti-parallel
Strand 8
A
600 604anti-parallel
Strand 9
A
617 624anti-parallel
Strand 10
A
567 574anti-parallel
Strand 11
A
540 546parallel
Strand 12
A
473 479parallel
Strand 13
A
486 493anti-parallel
Strand 14
A
507 509anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 503first strand
Strand 2
A
486 493anti-parallel
Strand 3
A
473 479anti-parallel
Strand 4
A
540 546parallel
Strand 5
A
567 574parallel
Strand 6
A
617 624anti-parallel
Strand 7
A
600 604anti-parallel
Strand 8
A
592 595anti-parallel
Strand 9
A
307 315anti-parallel
Strand 10
A
5 18anti-parallel
Strand 11
A
581 583anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
64 66anti-parallel
Strand 3
A
27 30anti-parallel
Strand 4
A
91 95anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
84 85anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
174 175anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
464 465anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
344 350parallel
Strand 3
A
405 410parallel
Strand 4
A
432 436parallel
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