Analysis of interatomic Contacts of Structural Units in PDB entry:
3HMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HMB entry

There are 3 chains in PDB entry 3HMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 154
B
 SER -1GLY 154
C
 MET 1GLY 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3HMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 48Right-handed alpha
Helix 2
2
A
83 88Right-handed alpha
Helix 3
3
A
101 120Right-handed alpha
Helix 4
4
A
123 125Right-handed 310
Helix 5
5
A
130 135Right-handed alpha
Helix 6
6
A
139 144Right-handed alpha
Helix 7
7
A
145 152Right-handed alpha
Helix 8
8
B
39 48Right-handed alpha
Helix 9
9
B
83 88Right-handed alpha
Helix 10
10
B
101 120Right-handed alpha
Helix 11
11
B
123 125Right-handed 310
Helix 12
12
B
130 135Right-handed alpha
Helix 13
13
B
139 144Right-handed alpha
Helix 14
14
B
145 152Right-handed alpha
Helix 15
15
C
39 49Right-handed alpha
Helix 16
16
C
83 88Right-handed alpha
Helix 17
17
C
101 120Right-handed alpha
Helix 18
18
C
123 125Right-handed 310
Helix 19
19
C
131 133Right-handed 310
Helix 20
20
C
142 144Right-handed 310
Helix 21
21
C
145 151Right-handed alpha
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There are 2 sheets in PDB entry 3HMB. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
65 67parallel
Strand 3
A
58 60anti-parallel
Strand 4
A
89 94parallel
Strand 5
A
25 30parallel
Strand 6
A
127 129parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
25 30parallel
Strand 3
B
89 94parallel
Strand 4
B
58 60parallel
Strand 5
B
65 67anti-parallel
Strand 6
B
4 6parallel
Strand 7
C
4 6anti-parallel
Strand 8
C
65 67parallel
Strand 9
C
58 60anti-parallel
Strand 10
C
89 94parallel
Strand 11
C
25 30parallel
Strand 12
C
127 129parallel
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