Analysis of interatomic Contacts of Structural Units in PDB entry:
3HMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HMU entry

There are 2 chains in PDB entry 3HMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4HIS 467
B
 ILE 4GLU 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3HMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
27 35Right-handed alpha
Helix 3
3
A
59 64Right-handed alpha
Helix 4
4
A
71 85Right-handed alpha
Helix 5
5
A
96 110Right-handed alpha
Helix 6
6
A
122 141Right-handed alpha
Helix 7
7
A
160 167Right-handed alpha
Helix 8
8
A
169 175Right-handed alpha
Helix 9
9
A
189 194Right-handed alpha
Helix 10
10
A
198 218Right-handed alpha
Helix 11
11
A
242 254Right-handed alpha
Helix 12
12
A
274 280Right-handed alpha
Helix 13
13
A
289 293Right-handed 310
Helix 14
14
A
306 313Right-handed alpha
Helix 15
15
A
326 343Right-handed alpha
Helix 16
16
A
344 352Right-handed alpha
Helix 17
17
A
352 363Right-handed alpha
Helix 18
18
A
364 367Right-handed 310
Helix 19
19
A
387 391Right-handed 310
Helix 20
20
A
399 412Right-handed alpha
Helix 21
21
A
432 458Right-handed alpha
Helix 22
22
B
9 20Right-handed alpha
Helix 23
23
B
27 35Right-handed alpha
Helix 24
24
B
59 64Right-handed alpha
Helix 25
25
B
72 85Right-handed alpha
Helix 26
26
B
97 110Right-handed alpha
Helix 27
27
B
122 141Right-handed alpha
Helix 28
28
B
160 167Right-handed alpha
Helix 29
29
B
169 174Right-handed alpha
Helix 30
30
B
189 194Right-handed alpha
Helix 31
31
B
198 218Right-handed alpha
Helix 32
32
B
242 254Right-handed alpha
Helix 33
33
B
274 279Right-handed alpha
Helix 34
34
B
289 293Right-handed 310
Helix 35
35
B
306 313Right-handed alpha
Helix 36
36
B
326 343Right-handed alpha
Helix 37
37
B
344 352Right-handed alpha
Helix 38
38
B
352 363Right-handed alpha
Helix 39
39
B
364 367Right-handed 310
Helix 40
40
B
387 391Right-handed 310
Helix 41
41
B
399 412Right-handed alpha
Helix 42
42
B
432 457Right-handed alpha
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There are 6 sheets in PDB entry 3HMU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
B
114 120parallel
Strand 3
B
300 305anti-parallel
Strand 4
B
285 288anti-parallel
Strand 5
B
257 261parallel
Strand 6
B
222 227parallel
Strand 7
B
148 152parallel
Strand 8
B
182 185parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
37 43anti-parallel
Strand 4
B
94 96parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
B
37 43parallel
Strand 3
B
46 49anti-parallel
Strand 4
B
54 57anti-parallel
Strand 5
B
414 415parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
148 152parallel
Strand 3
A
222 227parallel
Strand 4
A
257 261parallel
Strand 5
A
285 288parallel
Strand 6
A
300 305anti-parallel
Strand 7
A
114 120anti-parallel
Strand 8
B
21 22parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 376first strand
Strand 2
A
379 384anti-parallel
Strand 3
A
422 425anti-parallel
Strand 4
A
417 419anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 376first strand
Strand 2
B
379 384anti-parallel
Strand 3
B
422 425anti-parallel
Strand 4
B
417 419anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il