Analysis of interatomic Contacts of Structural Units in PDB entry:
3HND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HND entry

There are 2 chains in PDB entry 3HND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 14ARG 742
B
 HIS 2VAL 561
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 3HND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 24Right-handed alpha
Helix 2
2
A
36 45Right-handed alpha
Helix 3
3
A
52 67Right-handed alpha
Helix 4
4
A
72 89Right-handed alpha
Helix 5
5
A
93 104Right-handed alpha
Helix 6
6
A
117 126Right-handed alpha
Helix 7
7
A
127 135Right-handed alpha
Helix 8
8
A
136 143Right-handed 310
Helix 9
9
A
144 155Right-handed alpha
Helix 10
10
A
166 180Right-handed alpha
Helix 11
11
A
182 195Right-handed alpha
Helix 12
12
A
201 208Right-handed alpha
Helix 13
13
A
227 244Right-handed alpha
Helix 14
14
A
271 286Right-handed alpha
Helix 15
15
A
307 312Right-handed alpha
Helix 16
16
A
320 324Right-handed 310
Helix 17
17
A
335 344Right-handed alpha
Helix 18
18
A
363 376Right-handed alpha
Helix 19
19
A
386 401Right-handed alpha
Helix 20
20
A
408 414Right-handed alpha
Helix 21
21
A
452 455Right-handed 310
Helix 22
22
A
462 484Right-handed alpha
Helix 23
23
A
488 499Right-handed alpha
Helix 24
24
A
507 515Right-handed alpha
Helix 25
25
A
521 551Right-handed alpha
Helix 26
26
A
566 572Right-handed alpha
Helix 27
27
A
580 592Right-handed alpha
Helix 28
28
A
606 612Right-handed alpha
Helix 29
29
A
638 647Right-handed alpha
Helix 30
30
A
652 661Right-handed alpha
Helix 31
31
A
673 680Right-handed alpha
Helix 32
32
A
687 700Right-handed alpha
Helix 33
33
A
716 730Right-handed alpha
Helix 34
34
B
16 24Right-handed alpha
Helix 35
35
B
30 34Right-handed 310
Helix 36
36
B
35 44Right-handed alpha
Helix 37
37
B
53 66Right-handed alpha
Helix 38
38
B
73 89Right-handed alpha
Helix 39
39
B
93 103Right-handed alpha
Helix 40
40
B
117 125Right-handed alpha
Helix 41
41
B
127 133Right-handed alpha
Helix 42
42
B
134 135Right-handed 310
Helix 43
43
B
136 143Right-handed 310
Helix 44
44
B
144 155Right-handed alpha
Helix 45
45
B
166 180Right-handed alpha
Helix 46
46
B
183 195Right-handed alpha
Helix 47
47
B
201 208Right-handed alpha
Helix 48
48
B
227 244Right-handed alpha
Helix 49
49
B
262 266Right-handed 310
Helix 50
50
B
271 286Right-handed alpha
Helix 51
51
B
307 312Right-handed alpha
Helix 52
52
B
320 324Right-handed 310
Helix 53
53
B
335 344Right-handed alpha
Helix 54
54
B
364 377Right-handed alpha
Helix 55
55
B
386 401Right-handed alpha
Helix 56
56
B
408 414Right-handed alpha
Helix 57
57
B
417 421Right-handed 310
Helix 58
58
B
452 455Right-handed 310
Helix 59
59
B
462 484Right-handed alpha
Helix 60
60
B
488 499Right-handed alpha
Helix 61
61
B
507 515Right-handed alpha
Helix 62
62
B
521 551Right-handed alpha
Helix 63
63
B
566 571Right-handed alpha
Helix 64
64
B
581 591Right-handed alpha
Helix 65
65
B
604 612Right-handed alpha
Helix 66
66
B
638 647Right-handed alpha
Helix 67
67
B
655 662Right-handed alpha
Helix 68
68
B
673 680Right-handed alpha
Helix 69
69
B
682 686Right-handed 310
Helix 70
70
B
687 699Right-handed alpha
Helix 71
71
B
716 730Right-handed alpha
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There are 11 sheets in PDB entry 3HND. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
446 450anti-parallel
Strand 3
A
502 506parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
247 251parallel
Strand 4
A
297 301parallel
Strand 5
A
329 334parallel
Strand 6
A
404 407parallel
Strand 7
A
734 736anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
382 385anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 628first strand
Strand 2
A
633 637anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 711first strand
Strand 2
A
739 740parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
10 11anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
446 450anti-parallel
Strand 3
B
502 506parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
442 444first strand
Strand 2
B
218 222anti-parallel
Strand 3
B
247 251parallel
Strand 4
B
297 301parallel
Strand 5
B
329 334parallel
Strand 6
B
404 407parallel
Strand 7
B
734 736anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 350first strand
Strand 2
B
382 385anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
624 627first strand
Strand 2
B
634 637anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
710 711first strand
Strand 2
B
739 740parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il