Analysis of interatomic Contacts of Structural Units in PDB entry:
3HNQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HNQ entry

There are 4 chains in PDB entry 3HNQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 19VAL 144
B
 MSE 19VAL 144
C
 MSE 19VAL 144
D
 MSE 19VAL 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3HNQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 44Right-handed alpha
Helix 2
2
A
96 107Right-handed alpha
Helix 3
3
B
33 44Right-handed alpha
Helix 4
4
B
96 107Right-handed alpha
Helix 5
5
C
33 44Right-handed alpha
Helix 6
6
C
96 107Right-handed alpha
Helix 7
7
D
33 44Right-handed alpha
Helix 8
8
D
96 107Right-handed alpha
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There are 4 sheets in PDB entry 3HNQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
64 70anti-parallel
Strand 4
A
21 31parallel
Strand 5
B
88 93anti-parallel
Strand 6
B
137 143parallel
Strand 7
B
124 131anti-parallel
Strand 8
B
113 119anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 119first strand
Strand 2
A
124 131anti-parallel
Strand 3
A
137 143anti-parallel
Strand 4
A
88 93parallel
Strand 5
B
21 31anti-parallel
Strand 6
B
64 70parallel
Strand 7
B
56 61anti-parallel
Strand 8
B
48 52anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 52first strand
Strand 2
C
56 61anti-parallel
Strand 3
C
64 70anti-parallel
Strand 4
C
21 31parallel
Strand 5
D
88 93anti-parallel
Strand 6
D
137 143parallel
Strand 7
D
123 131anti-parallel
Strand 8
D
113 120anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 120first strand
Strand 2
C
123 131anti-parallel
Strand 3
C
137 143anti-parallel
Strand 4
C
88 93parallel
Strand 5
D
21 31anti-parallel
Strand 6
D
64 70parallel
Strand 7
D
56 61anti-parallel
Strand 8
D
48 52anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il